L. Rubanov - Publications

2020

Rubanov L., Shilovsky G., Seliverstov A., Zverkóv O., Lyubetsky V., Gene loss prediction based on genomic structure. The proceedings of International forum Biotechnology: state of the art and perspectives, Moscow, Russia, October 2830 2020, Iss. 18, P. 259260. DOI: 10.37747/2312-640X-2020-18-258-260 http://iitp.ru/https://doi.org/10.37747/2312-640X-2020-18-258-260
Lyubetsky V., Shilovsky G., Zverkóv O., Seliverstov A., Rubanov L., New bioinformatics methods for identification of lost genes and protein isoforms. Homo sapiens liberatus, Proceedings of the 3rd International Conference in celebration of the 85th birthday of professor V.P. Skulachev, Moscow, Russia, February 2021 2020, Abstract Book. Moscow: Torus Press, 2020, P. 4142. DOI: 10.30826/HomoSapiens-2020-30 http://iitp.ru/https://www.elibrary.ru/item.asp?id=42660982
Lyubetsky V., Shilovsky G., Seliverstov A., Zverkóv O., Rubanov L., Evolution of proteins involved in response to ROS. Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2020), The Twelfth International Multiconference Abstracts, Novosibirsk, Russia, 610 July 2020. Novosibirsk: ICG SB RAS, 2020, P. 652653. DOI: 10.18699/BGRS/SB-2020-398 http://iitp.ru/https://doi.org/10.18699/BGRS/SB-2020-398
Rubanov L., Zverkóv O., Shilovsky G., Seliverstov A., Lyubetsky V., Protein-coding genes in Euarchontoglires with pseudogene homologs in humans. Life, 2020, Vol. 10, No. 9, Art. 192, 10 pp. DOI: 10.3390/life10090192, PMID: 32927891 http://iitp.ru/https://doi.org/10.3390/life10090192
Lyubetsky V., Zverkóv O., Rubanov L., Seliverstov A., Optimal growth temperature and intergenic distances in bacteria, archaea, and plastids of rhodophytic branch. BioMed Research International, 2020, Vol. 2020, Art. 3465380, 10 pp. DOI: 10.1155/2020/3465380, PMID: 32025518 http://iitp.ru/https://www.hindawi.com/journals/bmri/2020/3465380/

2019

Rubanov L., Shilovsky G., Seliverstov A., Zverkóv O., Lyubetsky V., Mouse genes lost in rodent and primate species with long lifespan. The proceedings of International congress Biotechnology: state of the art and perspectives, Moscow, Russia, February 2527 2019, Iss. 17, P. 342. http://iitp.ru/https://elibrary.ru/item.asp?id=37590373
Rubanov L., Zaraisky A., Shilovsky G., Seliverstov A., Zverkóv O., Lyubetsky V., Screening for mouse genes lost in mammals with long lifespans. BioData Mining, 2019, Vol. 12, Art. 20. DOI: 10.1186/s13040-019-0208-x, PMID: 31728160 (WoS Q1) http://iitp.ru/https://doi.org/10.1186/s13040-019-0208-x
Shilovsky G., Zverkóv O., Seliverstov A., Ashapkin V., Putyatina T., Rubanov L., Lyubetsky V., New C-terminal conserved regions of tafazzin, a catalyst of cardiolipin remodeling. Oxidative Medicine and Cellular Longevity, Vol. 2019, Art. 2901057. DOI: 10.1155/2019/2901057, PMID: 31781330 http://iitp.ru/https://www.hindawi.com/journals/omcl/2019/2901057/
Korotkova D., Lyubetsky V., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Martynova N., Nesterenko A., Tereshina M., Peshkin L., Zaraisky A., Bioinformatics screening of genes specific for well-regenerating vertebrates reveals c-answer, a regulator of brain development and regeneration. Cell Reports, Vol. 29, Iss. 4, P. 10271040. DOI: 10.1016/j.celrep.2019.09.038, PMID: 31644900 (WoS Q1, IF 8) http://iitp.ru/https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31226-4
Seliverstov A., Zverkóv O., Rubanov L., Lyubetsky V., Protein clustering and gene loss prediction. Computer Assisted Mathematics Conference. Electrotechnical University "LETI" Saint-Petersburg, Russia, July 22-24, 2019. P. 7 http://cte.eltech.ru/ojs/public/static/ProgramCAM-2019.pdf

2018

Korotkova D., Lyubetsky V., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Martynova N., Nesterenko A., Tereshina M., Peshkin L., Zaraisky A., Bioinformatic screening of genes present only in well regenerating vertebrates reveals novel FGF and purinergic signaling modulator - c-Answer. bioRxiv, 13 Dec 2018. DOI: 10.1101/494609 http://iitp.ru/https://doi.org/10.1101/494609
Seliverstov A., Shilovsky G., Rubanov L., Zverkóv O., Lyubetsky V., Longevity in mammals: lost genes as a determinant. Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2018): The Eleventh International Conference (2025 Aug. 2018, Novosibirsk, Russia); Abstracts. Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences; Novosibirsk State University. Novosibirsk: ICG SB RAS, 2018. P. 249. DOI: 10.18699/BGRSSB-2018-221 http://conf.bionet.nsc.ru/bgrssb2018/en/
Seliverstov A., Rubanov L., Shilovsky G., Zverkóv O., Lyubetsky V., Longevity in euarchontoglires: lost genes as a determinant. FEBS Open Bio, 2018, Vol. 8 (Suppl. 1), P. 456457; DOI: 10.1002/2211-5463.12453. http://iitp.ru/https://doi.org/10.1002/2211-5463.12453

2017

Lyubetsky V., Gershgorin R., Rubanov L., Seliverstov A., Zverkóv O., Evolution and systematics of plastids of rhodophytic branch. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB17, Moscow, Russia, July 2730 2017, P. 48. http://iitp.ru/https://elibrary.ru/item.asp?id=32563226
Lyubetsky V., Rubanov L., Gorbunov K., Zverkóv O., Seliverstov A., Highly conserved elements in mitochondrial genomes of ciliates and monocots. Materials of the IX International Congress Biotechnology: State of the Art and Prospects of Development, Moscow, Russia, February 2022 2017, Part 1, P. 393. http://iitp.ru/https://elibrary.ru/item.asp?id=29220438
Zverkóv O., Rubanov L., Rusin L., Seliverstov A., Lyubetsky V., Finding long highly conserved elements in complete animal genomes. CEUR Workshop Proceedings, Feb 23 2018, Vol. 2064, Convergent Cognitive Information Technologies 2017, P. 402408, in Russian. http://ceur-ws.org/Vol-2064/paper47.pdf
Lyubetsky V., Korotkova D., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Nesterenko A., Tereshina M., Zaraisky A.G., Novel transmembrane protein c-Answer revealed by bioinformatic screening of genes present only in well regenerating animals. FEBS Journal, 2017, Vol. 284, Iss. S1, P. 155. doi:10.1111/febs.14174
Rubanov L., Seliverstov A., Projective-invariant description of a meandering river. Journal of Communications Technology and Electronics, 2017; vol. 62, no. 6, p. 663668. DOI: 10.1134/S1064226917060201.
Gershgorin R., Gorbunov K., Zverkóv O., Rubanov L., Seliverstov A., Lyubetsky V., Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates. Life, 2017, Vol. 7, No. 9. doi:10.3390/life7010009, PMID: 28264444 http://www.mdpi.com/2075-1729/7/1/9/htm

2016

Rubanov L., Seliverstov A., Zverkóv O., Lyubetsky V., A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata. BMC Bioinformatics. 2016, vol. 17, art. 385, 16 pp. DOI: 10.1186/s12859-016-1257-5, PMID: 27645252 http://dx.doi.org/10.1186/s12859-016-1257-5
Rubanov L., Seliverstov A., Projective-Invariant Description of Meandering River. Information processes. 2016. Vol. 16, no. 3, pp. 281-290 (in Russian) http://www.jip.ru/2016/16-3-2016.htm

2015

Lyubetsky V., Rubanov L., Bairamov A., Shandarin I., Ivanova A., Rusin L., Zverkóv O., Seliverstov A., Zaraisky A., A large-scale search for gene losses, gains and syntenic rearrangements in vertebrate animals. Materials of the VIII Moscow International Congress Biotechnology: State of the Art and Prospects of Development, Moscow, March 1720 2015, Part 1, P. 260261. http://iitp.ru/https://elibrary.ru/item.asp?id=25631493
Lyubetsky V., Rubanov L., Zverkóv O., Rusin L., Seliverstov A., Zaraisky A., A method of detecting local gene synteny rearrangement. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB15, Moscow, July 1619 2015, Moscow, IITP RAS, 2015, P. 249252. http://mccmb.belozersky.msu.ru/2015/proceedings/author.html

2014

Gershgorin R.A., Rubanov L., Seliverstov A., Easily Computable Invariants for Hypersurface Recognition, Journal of Communications Technology and Electronics, 2015. Vol. 60. No. 12. P. 14291431 http://www.jip.ru/2014/365-369-2014.pdf
Rubanov L., "Parallelization of nonuniform loops in supercomputers with distributed memory" Journal of Communications Technology and Electronics, 2014, Vol. 59, No. 6, P. 639646.
Lyubetsky V., Korolev S., Seliverstov A., Zverkóv O., Rubanov L., Gene expression regulation of the PF00480 or PF14340 domain proteins suggests their involvement in sulfur metabolism Computational Biology and Chemistry, 2014, vol. 49, p. 713. http://www.sciencedirect.com/science/article/pii/S1476927114000036

2012

Lyubetsky V., Rubanov L., Rusin L., Gorbunov K., "Cubic time algorithms of amalgamating gene trees and building evolutionary scenarios" Biology Direct, 2012, 7:48. PMID: 24513779 http://www.biologydirect.com/content/7/1/48
Lyubetsky V., Zverkóv O., Pirogov S., Rubanov L., Seliverstov A., Modeling RNA polymerase interaction in mitochondria of chordates. Biology Direct. 2012, 7:26. DOI: 10.1186/1745-6150-7-26, PMID: 22873568 http://www.biology-direct.com/content/7/1/26

2011

Gorbunov K., Rubanov L., Rusin L., Lyubetsky V., An accurate algorithm of cubic complexity to build supertrees Zitteliana. An International Journal of Palaeontology and Geobiology. Series B, Vol. 30, Abstracts of the international conference Deep Metazoan Phylogeny 2011 new data, new challenges", Munchen, Germany, October 1114 2011, P. 20.
Lyubetsky V., Zverkóv O., Rubanov L., Seliverstov A., Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level. Biology Direct. 2011, 6:3. DOI: 10.1186/1745-6150-6-3, PMID: 21255416 http://www.biology-direct.com/content/6/1/3

2010

Seliverstov A., Rubanov L., Lyubetsky V., Lack of Conservation of Bacterial Type Promoters in Plastids of Streptophyta Proceedings of the Seventh International Conference on Bioinformatics of Genome Regulation and StructureSystems Biology (BGRSSB2010), Novosibirsk, Russia, 20-27 June 2010, p. 170.
Lyubetsky V., Zverkóv O., Rubanov L., Seliverstov A., Interaction between nucleome and plastome: heat shock response regulation in plastids of plants. Proceedings of the Seventh International Conference on Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB"2010), Novosibirsk, Russia, June 2027 2010, P. 161.
Lyubetsky V., Rubanov L., Seliverstov A., Lack of conservation of bacterial type promoters in plastids of Streptophyta Biology Direct 2010, 5:34. PMID: 20459727 http://www.biology-direct.com/content/5/1/34
Kondratenkov I.B., Rubanov L., , // 2010, , 20-24 2010, . 121-126. http://www.itas-proceedings.iitp.ru/pdf/1569320973.pdf
Kondratenkov I.B., Rubanov L., - . , 2010, 2 (26), . 64-70.

2009

Lyubetsky V., Rubanov L., Seliverstov A., RNA polymerase competition at complementary DNA strands Proceedings of the Genetics and Selection Meeting and V Congress of the Vavilov Genetics and Selection Society, Moscow, June 21-27 2009, Part II, p. 68.
Lyubetsky V., Zhizhina E., Rubanov L., Gibbs Field for Evolutionary Analysis of Regulatory Signal of Gene Expression under Constraints on Secondary Structure The 18th IMACS World Congress on Computational and Applied Mathematics & Applications in Science and Engineering, August 3-5, 2009, The University of Georgia, Athens, GA 30602-7404, USA, . 54.

2008

Rubanov L., Seliverstov A., Lyubetsky V., Multiple alignment based on species tree Abstracts of The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS2008), Novosibirsk, June 2228, p. 212. http://www.bionet.nsc.ru/meeting/bgrs2008/BGRS2008_Proceedings.pdf
Lyubetsky V., Zhizhina E., Rubanov L., A model of regulatory signal evolution Abstracts of The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS2008), Novosibirsk, June 2228, p. 148. http://www.bionet.nsc.ru/meeting/bgrs2008/BGRS2008_Proceedings.pdf
Lyubetsky V., Zhizhina E., Rubanov L., Gibbs Field Approach for Evolutionary Analysis of Regulatory Signal of Gene Expression Problems of Information Transmission, 2008, V. 44, No 4, pp. 333351.

2007

Rubanov L., Lyubetsky V., RNAmodel Web Server: Modeling Classic Attenuation in Bacteria In Silico Biology, 2007, V. 7, No 3, pp. 285308. PMID: 18415978 http://www.bioinfo.de/isb/2007/07/0044/
Lyubetsky V., Pirogov S., Rubanov L., Seliverstov A., Modeling classic attenuation regulation of gene expression in bacteria Journal of Bioinformatics and Computational Biology, Vol. 5, Iss. 1, 2007, pp. 155180. PMID: 17477496

2006

Lyubetsky V., Rubanov L., Seliverstov A., Pirogov S., Model of gene expression regulation in bacteria via formation of RNA secondary structures Molecular Biology, 2006, V. 40, No 3, p. 440453.

2005

Lyubetsky V., Gorbunov K., Pirogov S., Rubanov L., Seliverstov A., An algorithm and search results for a model of gene expression regulation with RNA secondary structures in bacteria Information Processes, 2005, V. 5, No 5, pp. 337366. [in Russian] http://www.jip.ru/2005/337-366.pdf

2002

Merzlyakov N., Rubanov L., Karnaukhov V., Multi-scale image presentation in a digital archive. Proceedings of Second International Conference on Image and Graphics ICIG2002, 2002, pp.1067-1074.
Rubanov L., Merzlyakov N., Karnaukhov V., Osipova N., Strategy of creation of digital archives accessible through the Internet // Proc. of IS&T/SPIEs 14th Annual Symposium Electronic Imaging 2002: Science and Technology, 20-25 January 2002, San Jose, California, USA / Internet Imaging III, G.B. Beretta, R. Schettini (eds.), Proceedings of SPIE, 2002, Vol.4672, p.181-189
Lyubetsky V., Rubanov L., Parallel Algorithm for Searching Regulatory Signal in Bacterial Genome Proceedings of the Third International Conference of Bioinformatics of Genome Regulation and Structure (BGRS2002), Novosibirsk, Russia, July 14-20, 2002, v. 1, p. 24-27. http://www.bionet.nsc.ru/meeting/bgrs_proceedings/papers/2002/BGRS_2002_1_005.pdf

2000

Merzlyakov N., Karnaukhov V., Rubanov L., Integration of Image Processing and Database Management Systems. First International Conference on Image and Graphics, August 16-18, Tianjin, China, 2000, p.665-668.

1998

Karnaukhov V., Miller B., Rubanov L., Merzlyakov N.S., Digital archives of manuscripts and photo-documents: technology and experience. // Proc. of International Conference EVA98, Moscow 1 5 December 1998, STG, M., 1998, pp.5/1/15/1/9.
Karnaukhov V., Merzlyakov N.S., Rubanov L., Image processing and storage in digital archives of manuscripts and photo-documents. // Proc. of 5-th Open German-Russian Workshop on Pattern Recognition and Image Understanding (21-25 September 1998, Herrshing, Germany). Sankt Augustin: Infix, 1999. p.176-183.