2010 |
V'yugin V., On games of continuous and discrete randomized forecasting // Slides of Talk at GTP 2010: Third Workshop on Game-Theoretic Probability and Related Topics, 21 - 23 June 2010, Royal Holloway, University of London, Egham, Surrey, UK
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2009 |
V'yugin V., Coding-invariant Classifcation of Infnite Sequences // 4th International Conference on Logic, Computability and Randomness, June 29th - July 3rd, 2009.
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V'yugin V., On games of continuous and discrete randomized forecasting // Dobrushin International
Conference, July 15-20 2009, Moscow, Proceedings, p.173-178, ISBN 978-5-901158-10-4.
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V'yugin V., Learning Volatility of Discrete Time Series Using Prediction with Expert Advice // O. Watanabe and T. Zeugmann (Eds.): SAGA 2009, Lecture Notes in Computer Science 5792, pp. 16–30, Springer-Verlag Berlin Heidelberg 2009
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V'yugin V., The Follow Perturbed Leader Algorithm Protected from Unbounded One-Step Losses // R. Gavald`a et al. (Eds.): ALT 2009, Lecture Notes in Artificial Intelligence 5809, pp. 38–52, Springer-Verlag Berlin Heidelberg 2009
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V'yugin V., On Calibration Error of Randomized Forecasting Algorithms // Theoretical Computer Science 410 (2009) 17811795 (extended version)
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2008 |
V'yugin V., On Sequences with Non-Learnable Subsequences // CSR 2008 (E.. Hirsh,, A.Razborov, and A.Semenov, A.Slissenko (Eds.)) LNCS 5010, pp. 302–313, 2008.
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2006 |
Lyubetsky V., Gorbunov K., Rusin L., V'yugin V., “Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny” An article in the book: “Bioinformatics of Genome Regulation and Structure II”, Springer Science & Business Media, Inc. 2006, pp. 189–204. http://www.springerlink.com/content/q67568k37g687647/
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2005 |
Rusin L., V'yugin V., Lyubetsky V., “Phylogenetic signal vs. informational noise: combat for resolution”
Proceedings of the international conference “9th Evolutionary Biology Meeting”, Marseille, France, September 21–23 2005.
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Rusin L., V'yugin V., Lyubetsky V., “A method to optimize primary sequence data for enhanced tree resolution”
Proceedings of the 4th European Conference on Computational Biology ECCB 2005, Madrid, Spain, September 28 – October 01 2005.
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Lyubetsky V., V'yugin V., “A model for evolutionary event reconstruction” MCCMB’05, 2005, pp. 217–219.
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Rusin L., V'yugin V., Lyubetsky V., “Enhancing phylogenetic inference: concentration of the signal in sequence data” MCCMB’05, 2005, pp. 342–346.
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Lyubetsky V., Gorbunov K., V'yugin V., Rusin L., “Removing noise in protein multiple alignment” Information Processes, 2005, V. 5, No 5, pp. 380–391. [in Russian] http://www.jip.ru/2005/380-391.pdf
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2004 |
Lyubetsky V., Gorbunov K., V'yugin V., “Inferring evolutionary events, quality of COGs, measuring the dissimilarity between gene and species trees” Presentation abstracts of the EMBO World Phylogenetic Course 2004. November 1–7 2004, Rio de Janeiro, Brazil.
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Lyubetsky V., V'yugin V., “Complex phylogenetic analysis of the evolutionary history for some prokaryotes family”
Biophysics (Moscow),
2004, V. 48, Suppl. 1 (2003), pp. 97–106.
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Lyubetsky V., V'yugin V., “Measuring the Dissimilarity Between Gene and Species Trees, the Quality of a COG”
Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 2, pp. 281–284. http://www.bionet.nsc.ru/meeting/bgrs_proceedings/papers/2004/BGRS_2004_V2_069.pdf
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2003 |
Lyubetsky V., V'yugin V., “Complex phylogenetic analysis of evolutionary history for prokaryotes families” MCCMB’03, 2003, pp. 146–147.
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V'yugin V., Gelfand M., Lyubetsky V., “Identification of Horizontal Gene Transfer from Phylogenetic Gene Trees” Molecular biology, V. 37, No 4, 2003, p. 571-584. PMID 12942641
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Lyubetsky V., V'yugin V., “Methods of horizontal gene transfer determination using phylogenetic data”
In Silico Biology,
V. 3, No 1,2, 2003, pp. 17–31.
PMID 12762843 http://www.bioinfo.de/isb/2003/03/0003
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2002 |
V'yugin V., Gelfand M., Lyubetsky V., “Tree Reconciliation: Reconstruction of Species Phylogeny by Phylogenetic Gene Trees” Molecular biology, 2002, V. 36, No 5, p. 650-658. PMID 12391844
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Lyubetsky V., V'yugin V., “Method of Horizontal Gene Transfer Determination Using Phylogenetic Data”
Proceedings of The Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2002), Novosibirsk, Russia, July 14–20, 2002, V. 2, pp. 61–63. http://www.bionet.nsc.ru/meeting/bgrs_proceedings/papers/2002/BGRS_2002_2_019.pdf
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V'yugin V., Lyubetsky V., Some approaches to detect HGTs with phylogenetic data. Information processes, 2002, V. 2, No 1, p. 120-140. [in Russian]
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2001 |
V'yugin V., Lyubetsky V., An algorithm to detect horizontal gene transfer events with multiple gene trees. Information processes, V. 1, No 2, 2001, p. 167-177. [in Russian]
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Gelfand M., V'yugin V., Lyubetsky V., An approach to infer evolutionary species tree from multiple gene data. Information processes, V. 1, No 1, 2001, p. 64-77. [in Russian]
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2000 |
V'yugin V., Gorbunov K., Lyubetsky V., Algorithms of detecting regulatory signal and constructing evolutionary trees. Proceedings of II international conference of the RAS «Issues in control and modeling in complex systems», Samara, 2000, RAS Press, p. 130-137. [in Russian]
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