O. Zverkóv - Publications

2017

Lyubetsky V., Korotkova D., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Nesterenko A., Tereshina M., Zaraisky A.G., Novel transmembrane protein c-Answer revealed by bioinformatic screening of genes present only in well regenerating animals. FEBS Journal, 2017, submitted: May 3 2017, accepted: Jun 8 2017
Gershgorin R., Gorbunov K., Zverkóv O., Rubanov L., Seliverstov A., Lyubetsky V., Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates. Life, 2017, Vol. 7, No. 9, 11 pages. doi:10.3390/life7010009, PMID: 28264444. http://www.mdpi.com/2075-1729/7/1/9/htm

2016

Korolev S., Gorbunov K., Zverkóv O., Seliverstov A., Lyubetsky V., Degenerate inverted repeats in the genomes of mycobacterium. CEUR Workshop Proceedings (CEUR-WS.org), Selected Papers of the First International Scientific Conference Convergent Cognitive Information Technologies (Convergent 2016), Moscow, Russia, November 25–26 2016, vol. 1763, p. 182–187, in Russian.
Rubanov L., Seliverstov A., Zverkóv O., Lyubetsky V., A Method for Identification of Highly Conserved Elements and Evolutionary Analysis of Superphylum Alveolata. BMC Bioinformatics, 2016, vol. 17, no. 385, 16 pages, DOI: 10.1186/s12859-016-1257-5, PMID: 27645252. http://dx.doi.org/10.1186/s12859-016-1257-5
Korolev S., Zverkóv O., Seliverstov A., Lyubetsky V., Ribosome reinitiation at leader peptides increases translation of bacterial proteins. Biology Direct, 2016, vol. 11, no. 20, 6 pages, DOI: 10.1186/s13062-016-0123-8, PMID: 27084079. http://biologydirect.biomedcentral.com/articles/10.1186/s13062-016-0123-8#CR11
Zverkóv O., Seliverstov A., Lyubetsky V., Regulation of Expression and Evolution of Genes in Plastids of Rhodophytic Branch. Life, 2016, vol. 6, no. 7, 13 pages, DOI: 10.3390/life6010007, PMID: 26840333. http://www.mdpi.com/2075-1729/6/1/7/htm

2015

Seliverstov A., Zverkóv O., Istomina S., Pirogov S., Kitsis P., “Comparative analysis of apicoplast-targeted protein extension lengths in Apicomplexan parasites” BioMed Research International, 2015, Vol. 2015, Article ID 452958, 6 pages. http://www.hindawi.com/journals/bmri/2015/452958/
Zverkóv O., Seliverstov A., Lyubetsky V., “A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene“ BioMed Research International, 2015, Vol. 2015, Article ID 510598, 5 pages, DOI: 10.1155/2015/510598, PMID: 26114108. http://www.hindawi.com/journals/bmri/2015/510598/

2014

Zverkóv O., Seliverstov A., Lyubetsky V., “A database of Rhodophyte plastid protein families and regulation of moeB genes” Abstracts of the Ninth International Conference on Bioinformatics of Genome Regulation and StructureSystems Biology (BGRSSB"2012), Novosibirsk, Russia, June 23–28 2014, p. 176.
Lyubetsky V., Korolev S., Seliverstov A., Zverkóv O., Rubanov L., “Gene expression regulation of the PF00480 or PF14340 domain proteins suggests their involvement in sulfur metabolism” Computational Biology and Chemistry, 2014, vol. 49, p. 7–13. http://www.sciencedirect.com/science/article/pii/S1476927114000036

2013

Lyubetsky V., Korolev S., Seliverstov A., Zverkóv O., “Rho-dependent attenuation of sulfur metabolism in mycobacteria” Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’13, Moscow, Russia, July 25–28 2013.
Kobets N., Goncharov D., Seliverstov A., Zverkóv O., Lyubetsky V., “Comparative analysis of apicoplast-targeted proteins in Toxoplasma gondii and other Apicomplexa species” Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’13, Moscow, Russia, July 25–28 2013.
Lyubetsky V., Seliverstov A., Zverkóv O., “Elaboration of the Homologous Plastid-Encoded Protein Families that Separate Paralogs in Magnoliophytes” Mathematical Biology and Bioinformatics, 2013, Vol. 8, No. 1, P. 225–233, (in Russian).
Zverkóv O., Seliverstov A., Lyubetsky V., “Averaged entropy as conservativity measure of genome regions” Tambov University Reports. Series: Natural and Technical Sciences, 2013, Vol. 18, Iss. 5, (part 2), P. 2529–2531, (in Russian).
Lyubetsky V., Seliverstov A., Zverkóv O., "Transcription Regulation of Plastid Genes Involved in Sulfate Transport in Viridiplantae" BioMed Research International, Vol. 2013 (2013), Article ID 413450, 6 p. http://www.hindawi.com/journals/bmri/2013/413450/
Zverkóv O., Rusin L., Seliverstov A., Lyubetsky V., “Study of Direct Repeats in Micro Evolution of Plant Mitochondria and Plastids Based on Protein Clustering” Moscow University Biological Sciences Bulletin, 2013, Vol. 68, No. 2, P. 58–62.

2012

Zverkóv O., Seliverstov A., Lyubetsky V., “Plastid-encoded protein families specific for narrow taxonomic groups of algae and protozoa” Molecular Biology (Moscow), 2012, Vol. 46, No. 5, P. 717-726.
Lyubetsky V., Zverkóv O., Pirogov S., Rubanov L., Seliverstov A., “Modeling RNA polymerase interaction in mitochondria of chordates” Biology Direct, 2012, 7:26. PMID: 22873568 http://www.biology-direct.com/content/7/1/26
Zverkóv O., Korolev S., Seliverstov A., Lyubetsky V., “Transcription regulation of plastid genes cysT and cysA in Viridiplantae” Molecular Phylogenetics: Contributions to the 3rd Moscow International Conference “Molecular Phylogenetics” (MolPhy-3), Moscow, Russia, July 31 – August 4, 2012, (Eds.: A. Troitsky, L. Rusin, V. Aleoshin), Moscow, Torus Press, 2012, P. 85.

2011

Zverkóv O., Gorbunov K., Seliverstov A., Lyubetsky V., “Protein clustering with accounting for domen architecture” Proceedings of the 54th conference of Moscow Institute of Physics and Technology “Basic and applied research in life sciences and engineering in modern information environment”, Moscow, Russia, November 25–26 2011, Section of Management and applied mathematics, Vol. 2, P. 88–89.
Lyubetsky V., Zverkóv O., Rubanov L., Seliverstov A., “Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level” Biology Direct 2011, 6:3. PMID: 21255416 http://www.biology-direct.com/content/6/1/3

2010

Lyubetsky V., Zverkóv O., Rubanov L., Seliverstov A., “Interaction Between Nucleome and Plastome: Heat Shock Response Regulation in Plastids of Plants” Proceedings of the Seventh International Conference on Bioinformatics of Genome Regulation and StructureSystems Biology (BGRSSB’2010), Novosibirsk, Russia, 20-27 June 2010, p. 161.
Zverkóv O., Seliverstov A., Lyubetsky V., “On an algorithm of protein clustering” Proceedings of the 53th conference of Moscow Institute of Physics and Technology “Modern problems of fundamental and applied sciences”, Moscow, Russia, November 24–29 2010, Part I, Vol. 1, P. 118–119. http://mipt.ru/nauka/53conf/Materialy+53+konferenzii/01-FRTK1-view-arpggzeu7il.pdf

2007

Lyubetsky V., Seliverstov A., Zverkóv O., “RNA Structures upstream leuA Genes in α-Proteobacteria” Proceedings of International Moscow Conference on Computational Molecular Biology: ÌÑÑÌÂ’07, p. 191–192.

2006

Seliverstov A., Zverkóv O., Lyubetsky V., “Translation of Some Chloroplast Genes Is Checked to Allow for Splicing and Editing” Biophysics, 2006, V. 51, Suppl. 1, pp. 18–22. (The supplement is published only in English by Pleiades Publishing, Inc.) http://www.springerlink.com/content/p7517k3187230111/