А.Г. Витрещак - Публикации

2011

Lazarev V.N., Levitskii S.A., Basovskii Y.I., Chukin M.M., Akopian T.A., Vereshchagin V.V., Kostrjukova E.S., Kovaleva G., Kazanov M., Malko D.B., Vitreschak A., Sernova N.V., Gelfand M., Demina I.A., Serebryakova M.V., Galyamina M.A., Vtyurin N.N., Rogov S.I., Alexeev D.G., Ladygina V.G., Govorun V.M., Complete genome and proteome of Acholeplasma laidlawii. Journal of Bacteriology 2011 Sep;193(18):4943-4953. http://jb.asm.org/content/193/18/4943.long

2009

Gelfand M., Kazakov A., Korostelev Y., Laikova O., Mironov A., Rakhmaninova A., 170, Rodionov D., Vitreschak A., Evolution of Regulatory Systems in Bacteria. Lecture Notes in Bioinformatics. 2009; 5542 (ISBRA 2009): 1-4.

2008

Vitreschak A., Mironov A., Lyubetsky V., Gelfand M., “Comparative genomic analysis of T-box regulatory systems in bacteria” Ribonucleic acids molecular biology (RNA), V. 14, No. 4, April 2008, pp. 717-735. PMID: 18359782 http://rnajournal.cshlp.org/content/14/4/717.full

2007

Kazanov M., Vitreschak A., Gelfand M., Abundance and functional diversity of riboswitches in microbial communities. BMC Genomics. 2007 Oct 1;8:347. http://www.biomedcentral.com/1471-2164/8/347
Витрещак А.Г., Миронов А.А., Любецкий В.А., Гельфанд М.С., «Компьютерный анализ, функциональная аннотация и изучение эволюции Т-бокс регулона в бактериях» Труды конференции ИТиС 30, Звенигород, 18–21 сентября 2007, сс. 220-221.
Vitreschak A., Lyubetsky V., Gelfand M., “Analysis of evolution of T-box regulatory elements prediction of amino acid transporters and other amino acid related genes” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 30–37.
Vitreschak A., Mironov A., Lyubetsky V., Gelfand M., “Function and evolutionary analysis of the T-box regulon in bacteria” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, November 2007, pp. 309–310.

2006

Витрещак А.Г., Регуляторные РНК-переключатели. Международная школа «биоинформатика, геномика и протеоимка». (2006) Алматы, 11-16 апр, (доклад).

2005

Гельфанд М.С., Герасимова А., Котельникова Е.А., Лайкова О.Н., Макеев В.Ю., Миронов А.А., Панина Е.М., Равчеев Д.А., Родионов Д.А., Витрещак А.Г., Comparative genomics and evolution of bacterial regulatory systems. Bioinformatics of Genome Regulation and Structure II (Springer Science+Business Media, Inc.) P. 111-119 (2005)
Витрещак А.Г., Кучеров Г., Computer prediction of H-NS regulon in E. coli. Comparative analysis of regulation of rrn operons in proteobacteria. Proceedings of the international conference on computational molecular biology (MCCMB-05), 2005, July 18-21, 2005, P. 403-405.

2004

Витрещак А.Г., Ноэ Л., Кучеров Г., Computer analysis of multiple repeats in bacteria. In the proceedings of the forth International Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, July 25-30, 2004. V. 2. P. 297-299.
Витрещак А.Г., Detection of multiple repeats in bacteria. Conference “Indexation de texte et découverte de motifs. Algorithmique des sequences”, Lille, France, December 9-10, 2004 (http://www.lifl.fr/BIOINFO/programme.html). http://www.lifl.fr/BIOINFO/programme.html
Родионов Д.А., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems. Nucleic Acids Res. 2004 Jun 23;32(11):3340-53. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15215334
Витрещак А.Г., Родионов Д.А., Миронов А.А., Гельфанд М.С., Riboswitches: the oldest mechanism for the regulation of gene expression? Trends in Genetics, 2004 Jan; 20(1):44-50. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TCY-4B4RT47-1&_user=10&_rdoc=1&_fmt=&_ori
Vitreschak A., Lyubetskaya E., Shirshin M., Gelfand M., Lyubetsky V., “Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis” FEMS Microbiological Letters, 2004, 234(2), pp. 357–370. PMID: 15135544 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2W-4C5VMJK-4&_user=10&_rdoc=1&_fmt=&_ori

2003

Витрещак А.Г., Identification of RNA 5’ UTR regulatory elements and prediction of RNA riboswitch mechanism of regulation of vitamin biosynthetic and transport genes in bacteria. Proceedings of the International Moscow Conference on Computational Molecular Biology. Moscow, Russia, July 22-25, 2003. P. 233.
Жанг З., Фейж Ж., Ченг А., Андерсон И., Бродянски В., Витрещак А.Г., Гельфанд М.С., Сайер М., A transporter of Escherichia coli specific for l- and d-methionine is the prototype for a new family within the ABC superfamily. Arch Microbiol, 2003. 180: 88-100. http://www.springerlink.com/content/ylj23b9fp53be09d/
Панина Е.М., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria. FEMS Microbiol Lett. 2003 May 28; 222(2):211-20. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2W-48GNYN9-1&_user=10&_rdoc=1&_fmt=&_ori
Родионов Д.А., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes. J Biol Chem. 2003 Oct 17; 278(42), 41148-59. http://www.jbc.org/cgi/content/full/278/42/41148
Родионов Д.А., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch? Nucleic Acids Research, 2003, Dec 1, 31(23):6748-57. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=14627808
Витрещак А.Г., Родионов Д.А., Миронов А.А., Гельфанд М.С., Regulation of the vitamin B(12) metabolism and transport in bacteria by a conserved RNA structural element. RNA. 2003 Sep; 9(9):1084-1097. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12923257

2002

Витрещак А.Г., Computer analysis of regulation of genes, encoding aminoacyl-tRNA synthetases and amino acid biosynthetic proteins in Gram positive bacteria: T-box RNA regulatory element. Prediction of regulation of new genes, including amino acid transporters. Proc. of the International Summer School "From Genome to Life: Structural, Functional and Evolutionary Approaches", Cargese, Corsica, France, July, 15-27, 2002, P. 57-58.
Витрещак А.Г., Родионов Д.А., Миронов А.А., Гельфанд М.С., Regulation of bacterial riboflavin genes by a conserved RNA structural element. In the proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, July 14-20, 2002. V. 2. P. 44-46.
Панина Е.М., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Bioinformatics approach to analysis of regulation of aromatic amino acids biosynthesis in Bacillus/Clostridium group. In the proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, July 14-20, 2002. V. 2. P. 32-35.
Витрещак А.Г., Панина Е.М., Родионов Д.А., Миронов А.А., Гельфанд М.С., Comparative analysis of RNA regulation in bacterial genomes. Proc. of the Meeting of International Research Scholars of the Howard Hughes Medical Institute, Palm Cove, Australia, June, 25-28, 2002.
Витрещак А.Г., Компьютерное предсказание регуляторных сайтов мРНК. Анализ регуляции экспрессии генов биосинтеза аминокислот и генов, кодирующих тРНК-синтетазы в грам-положительных бактериях // Электронный научный журнал “Информационные процессы”. 2002. Т. 2. № 1. С. 91-95 (http://www.jip.ru/). http://www.jip.ru/2002/VITR.pdf
Родионов Д.А., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Comparative Genomics of Thiamin Biosynthesis in Procaryotes. New Genes and Regulatory Mechanisms. J. Biol. Chem. 2002 Dec 13;277(50):48949-59. http://www.jbc.org/cgi/content/full/277/50/48949
Витрещак А.Г., Родионов Д.А., Миронов А.А., Гельфанд М.С., Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Research. 2002. V. 30(14) P. 3141-51. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12136096

2001

Гельфанд М.С., Лайкова О., Миронов А.А., Новичков П.С., Панина Е.М., Родионов Д.А., Витрещак А.Г., Comparative analysis of bacterial patterns. In the abstracts of Meeting of HHMI International Research Scholars. Vancouver, Canada, June 20-23, 2001, P. 75.
Витрещак А.Г., Computer analysis of regulation of genes, encoding aminoacyl-tRNA synthetases and amino acid biosynthetic proteins in Gram positive bacteria: T-box RNA regulatory element. Prediction of regulation of new genes, including amino acid transporters. In the abstracts of International School “Artifical Intelligence and Heuristic Methods for Bioinformatics”, Italy, San-Miniato, October 1-11, 2001, P. 63.
Витрещак А.Г., Миронов А.А., Гельфанд М.С., Computer prediction of RNA secondary structure. The RNApattern program: searching for RNA secondary structure by the pattern rule. In the proceedings of the third International Conference "ComplexSystems: Control and modeling problems". Russia, Samara, June, 2001, PP. 623-625.
Панина Е.М., Витрещак А.Г., Миронов А.А., Гельфанд М.С., Regulation of Aromatic Amino Acid Biosynthesis in Gamma-Proteobacteria. J. Mol. Microbiol. Biotechnol. 2001. V. 3. P. 529-543. http://www.horizonpress.com/jmmb/v3/v3n4/07.pdf

2000

Витрещак А.Г., Миронов А.А., Гельфанд М.С., Comparative approach of regulation in complete genomes: attenuators of aromatic amino acid operons of gamma-proteobacteria. In the proceedings of the second International Conference "ComplexSystems: Control and modeling problems". Russia, Samara, June, 2000, PP. 141-142.
Витрещак А.Г., Гельфанд М.С., Сравнительный подход к анализу регуляции в полных геномах: аттенюаторы ароматических аминокислотных оперонов гамма-протеобактерий. В материалах школы-конференции “Горизонты физико-химической биологии”, Пущино, Май, 2000, С. 231.
Витрещак А.Г., Бансал А., Гельфанд М.С., Comparative approach to analysis of regulation in complete genomes: attenuators of aromatic amino acid operons of gamma-proteobacteria. In the proceedings of the first International Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, August 7-11, 2000. V. 2. P. 55-56.
Витрещак А.Г., Гельфанд М.С., Computer analysis of control signals in bacterial genomes. Attenuators of operons of aromatic amino acids metabolism. Mol Biol (rus). 2000, 34(4):461-67 http://www.springerlink.com/content/rn126571v2w17765/?p=7f037f93bed342e1950dae9eeaa6ee32&pi=1

1999

Гельфанд М.С., Витрещак А.Г., Миронов А.А., Information interactions and regulatory patterns in bacterial genomes. In the proceedings of the first International Conference "ComplexSystems: Control and modeling problems". Russia, Samara, June, 1999, PP. 101-105.
Витрещак А.Г., Гельфанд М.С., Компьютерный анализ регуляторных сигналов в полных бактериальных геномах. Инициация трасляции оперонов рибосомальных белков. Биофизика. 1999. Т. 44. С. 601-610.

1998

Витрещак А.Г., Гельфанд М.С., Conserved RNA structures regulation initiation of translation of Escherichia coli and Haemophilus influenzae ribosomal protein operons. In the abstracts of Theoretical biophysics international school, Moscow, June 15-20, 1998. P. 105.
Витрещак А.Г., Бансал А., Гельфанд М.С., Conserved RNA structures regulate initiation of translation of Escherichia coli and Haemophilus influenzae ribosomal protein operons. In the proceedings of the first International Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, August 24-31, 1998. V. 1. P. 229.