Bazykin GA, Kondrashov AS. Major role of positive selection in the evolution of conservative segments of Drosophila proteins. Proc Biol Sci. 2012. 279(1742):3409-17

Seplyarskiy VB, Kharchenko P, Kondrashov AS, Bazykin GA. Heterogeneity of the Transition/Transversion Ratio in Drosophila and Hominidae Genomes. Mol Biol Evol. 2012. 29(8): 1943 - 1955.

Leushkin EV, Bazykin GA, Kondrashov AS. Insertions and deletions trigger adaptive walks in Drosophila proteins. Proc Biol Sci. 2012 Aug 7;279(1740):3075-82. Epub 2012 Mar 28.

Naumenko S.A., Kondrashov A.S. and Bazykin G.A. (2012). Fitness conferred by replaced amino acids declines with time. Biology Letters. 2012 Oct 23;8(5):825-8. Epub 2012 May 23.

Bazykin GA, Kondrashov AS. Detecting past positive selection through ongoing negative selection. Genome Biology and Evolution 2011;3:1006-13. Epub 2011 Aug 22.

Kryazhimskiy S, Dushoff J, Bazykin G, Plotkin J. Prevalence of epistasis in the evolution of influenza A surface proteins. PLoS Genetics, 2011 Feb;7(2):e1001301. Epub 2011 Feb 17.

Evolution of prokaryotic genes by shift of stop codons. Journal of Molecular Evolution 2011 Feb;72(2):138-146.
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Vishnoi A, Kryazhimskiy S, Bazykin G, Hannenhalli S, Plotkin J. Young proteins experience more variable selection pressures than old proteins. Genome Research, 2010 Nov;20(11):1574-81. Epub 2010 Oct 4.

Bazykin G, Kochetov A. Alternative translation start sites are conserved in eukaryotic genomes. Nucleic Acids Research, 2011 Jan;39(2):567-77. Epub 2010 Sep 22.

Polymorphism Due to Multiple Amino Acid Substitutions at a Codon Site Within Ciona savignyi. Genetics 181: 685–690.
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Nucleotide repeats in mitochondrial genome determine human lifespan. Nature Precedings hdl:10101/npre.2008.2399.1
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Directionality in the Evolution of Influenza A Hemagglutinin. Proceedings of the Royal Society B (Biological Sciences) 275:2455–2464.
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[SPOTLIGHT] Natural selection for nucleotide usage at synonymous and non-synonymous sites in the influenza A genes. Journal of Virology 82(10): 4938-4945.
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Extensive parallelism in protein evolution. Biology Direct 2:20.
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Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites. Proceedings of the National Academy of Sciences of the United States of America 103:19396–19401.
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Comparative genomics of transcriptional regulation in yeasts and its application to identification of a candidate alpha-isopropylmalate transporter. Journal of Bioinformatics and Computational Biology 4(5):981–998.
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Rate of promoter class turn-over in yeast evolution. BMC Evolutionary Biology, 10;6(1):14.
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Females delay dispersal and breeding in a solitary gerbil Meriones tamariscinus. Journal of Mammalogy 85(1):105–112.
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Positive selection at sites of multiple amino acid replacements since rat–mouse divergence. Nature 429: 558–562. Supplementary materials
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