D. Rodionov - Publications

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2013 year

Authors: Novichkov P.S., 60, 170, Leyn S., Kovaleva G., Sutormin R.A., Kazanov M., Riehl W., Arkin A.P., Dubchak I., Rodionov D.

RegPrecise 3.0 -- A resource for genome-scale exploration of transcriptional regulation in bacteria, BMC Genomics, 14(1):745, 2013.

2013 year

Authors: Sun E.I., Leyn S., Kazanov M., Saier M.H., Rodionov D., Novichkov P.S.

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria, BMC Genomics, 2013, 14:597.

2013 year

Authors: Leyn S., Kazanov M., Sernova N.V., Ermakova E., Novichkov P.S., Rodionov D.

Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis, J Bacteriol. 2013 Jun;195(11):2463-73.

2013 year

Authors: 170, Best A.A., Sernova N.V., Kazanov M., Novichkov P.S., Rodionov D.

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria, BMC Genomics. 2013 Feb 12;14:94.

2012 year

Authors: Kazanov M., Li X., Gelfand M., L. Osterman A., Rodionov D.

Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum. Nucleic Acids Res. 2012 Dec 2.
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2011 year

Authors: Rodionov D., Novichkov P.S., Stavrovskaya E., Rodionova I.A., Li X, Kazanov M., 170, Gerasimova A.V., 60, Kovaleva G., Permina E.A., Laikova O.N., Overbeek R, Romine M.F., Fredrickson J.K., Arkin A.P., Dubchak I, Osterman A.L., Gelfand M.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics. 2011 Jun 15;12 Suppl 1:S3.
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2010 year

Authors: Rodionov D., Schroeder J., Jochmann N., Tauch A.

The Zur regulon of Corynebacterium glutamicum ATCC 13032. BMC Genomics, 11: 12.
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2010 year

Authors: Novichkov P.S., Laikova O., Novichkova E., Gelfand M., Arkin A., Dubchak I., Rodionov D.

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 2010,
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2010 year

Authors: Gorbunov K., Laikova O.N., Rodionov D., Gelfand M., Lyubetsky V.

“Evolution of regulatory motifs of bacterial transcription factors” In Silico Biology, 2010, 10, 0012.
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2009 year

Authors: Zhang Y., Rodionov D., Gelfand M., Gladyshev V.N.

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization. BMC Genomics. 2009, 10: 78.
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2009 year

Authors: Desai T., Rodionov D., Gelfand M., Alm E.J., Rao C.

Engineering transcription factors with novel DNA-binding specificity using comparative genomics. Nucleic Acids Res. 2009, 37: 2493-503.
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2009 year

Authors: Gelfand M., 60, Korostelev Y., Laikova O., Mironov A., Rakhmaninova A., 170, Rodionov D., Vitreschak A.

Evolution of Regulatory Systems in Bacteria. Lecture Notes in Bioinformatics. 2009; 5542 (ISBRA 2009): 1-4.

2009 year

Authors: Huang N., De Ingeniis J., Galeazzi L., Mancini C., Korostelev Y.D., Rakhmaninova A., Gelfand M., Rodionov D., Raffaelli N., Zhang H.

Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism. Structure. 2009, 17: 939-51.
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