Evolution of homology: From archetype towards a holistic concept of cell type. Journal of Morphology, 284(4), e21569. DOI: 10.1002/jmor.21569, WOS: 000939793400001, Scopus: 2-s2.0-85150724886 (JCR Q1)
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Paraphyly of Marimermithida refines primary routes of transition to parasitism in roundworms. Zoological Journal of the Linnean Society, April 2023, Vol. 197, Iss. 4, P. 909–923. DOI: 10.1093/zoolinnean/zlac070 (WoS Q1)
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Lack of evolutionary convergence in multiple primary lung cancer suggests insufficient specificity of personalized therapy. Journal of Genetics and Genomics, May 2023, Vol. 50, Iss. 5, P. 330–340. DOI: 10.1016/j.jgg.2022.11.005 (WoS Q1)
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Demise of Marimermithida refines primary routes of transition to parasitism in roundworms. bioRxiv, 2022.02.15.480519, Feb 19 2022. DOI: 10.1101/2022.02.15.480519
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Dicyemida and Orthonectida: Two stories of body plan simplification. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’19, Moscow, Russia, July 27–30 2019.
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Dicyemida and Orthonectida: Two stories of body plan simplification. Frontiers in Genetics Vol. 10, Article 443. DOI: 10.3389/fgene.2019.00443, PMID: 31178892 (WoS Q1, IF 5)
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Orthonectida and Dicyemida: Two stories of body plan simplification. In: Molecular Phylogenetics (Eds.: A. Troitsky, L. Rusin), Moscow: Torus Press, 2018, P. 3–4. DOI: 10.30826/MolPhy2018-01
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Phylogenomic evidence disentangles affinities of the Mesozoa. Proceedings of the 4th International Congress on Invertebrate Morphology (ICIM4), Moscow, Russia, August 18–23 2017, P. 55.
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Finding long highly conserved elements in complete animal genomes. CEUR Workshop Proceedings, Feb 23 2018, Vol. 2064, Convergent Cognitive Information Technologies 2017, P. 402–408, in Russian.
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A large-scale search for gene losses, gains and syntenic rearrangements in vertebrate animals. Materials of the VIII Moscow International Congress “Biotechnology: State of the Art and Prospects of Development”, Moscow, March 17–20 2015, Part 1, P. 260–261.
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A method of detecting local gene synteny rearrangement. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’15, Moscow, July 16–19 2015, Moscow, IITP RAS, 2015, P. 249–252.
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“Reconciliation of Gene and Species Trees” BioMed Research International, 2014, Vol. 2014, Article ID 642089, 22 pages.
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Study of Direct Repeats in Micro Evolution of Plant Mitochondria and Plastids Based on Protein Clustering. Moscow University Biological Sciences Bulletin. 2013, Vol. 68, No. 2, P. 58–62. DOI: 10.3103/S0096392513020119

"Cubic time algorithms of amalgamating gene trees and building evolutionary scenarios" Biology Direct, 2012, 7:48. PMID: 24513779
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“An accurate algorithm of cubic complexity to build supertrees” Zitteliana. An International Journal of Palaeontology and Geobiology. Series B, Vol. 30, Abstracts of the international conference “Deep Metazoan Phylogeny 2011 – new data, new challenges", Munchen, Germany, October 11–14 2011, P. 20.

“The Evolution of Proline Synthesis Transcriptional Regulation in Gammaproteobacteria” Moscow University Biological Sciences Bulletin, 2010, V. 65, No. 4, pp. 211–212.

“A phylogenomic pipeline to construct multi-gene datasets and infer multi-gene trees”, Proceedings of the international conference “Celebrating Darwin: from the Origin of Species to Deep Metazoan Phylogeny, DMP’09”, Berlin, Germany, March 4–6 2009.

“The origin of Metazoa: a transition from temporal to spatial cell differentiation” BioEssays, 2009, V. 31, Issue 07, pp. 758–768. PMID: 19472368

“The Gastrea theory in postgenomic age: cell differentiation preceded multicellularity in early metazoan evolution” Proceedings of the ICREA Conference on the Origin and Early Evolution of Metazoans, Barcelona Spain, October 24–25 2008.

“Phylogenomic pipeline and construction of a multi-gene dataset for Metazoa” Proceedings of the Annual Meeting of the Society for Molecular Biology and Evolution SMBE’2008, Barcelona Spain, June 5–8 2008.

“Algorithms to model gene evolution events and reconstruct multigene phylogenies of species” Proceedings of the international conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, Moscow, November 16–19 2007, KMK Scientific Press, P. 274–277.

“Phylogenomics of Metazoa: Constructing the Gene Set” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, 2007, pp. 267–268.

“Refinement of phylogenetic signal in multiple sequence alignment: results of simulation study” Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS"2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 222–224.
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“Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny” An article in the book: “Bioinformatics of Genome Regulation and Structure II”, Springer Science & Business Media, Inc. 2006, pp. 189–204.
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“Phylogenetic signal vs. informational noise: combat for resolution” Proceedings of the international conference “9th Evolutionary Biology Meeting”, Marseille, France, September 21–23 2005.

“A method to optimize primary sequence data for enhanced tree resolution” Proceedings of the 4th European Conference on Computational Biology ECCB 2005, Madrid, Spain, September 28 – October 01 2005.

“Enhancing phylogenetic inference: concentration of the signal in sequence data” MCCMB’05, 2005, pp. 342–346.

“Removing noise in protein multiple alignment” Information Processes, 2005, V. 5, No 5, pp. 380–391. [in Russian]
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