“Modeling classic attenuation regulation of gene expression in bacteria” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 1, pp. 102–105.
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“Refinement of phylogenetic signal in multiple sequence alignment: results of simulation study” Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS"2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 222–224.
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“Inferring regulatiory signal profiles and evolutionary events” Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS"2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 151–154.
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“Detecting Hairpins in 3’-Untranslated Regions of Highly Expressed Genes in Actinobacteria” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 1, pp. 99–101.
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“Evolutional and Functional Analysis of T-box Regulon in Bacteria: Identification of new Genes Involved in Amino Acid Metabolism” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 3, pp. 236–240.
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“Translation Regulation in Chloroplasts” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 1, pp. 146–149.
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“A Cofinal Family of Equivalence Relations and Borel Ideals Generating Them” Proceedings of the Steklov Institute of Mathematics, 2006, V. 252, No 1, pp. 85–103.
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“Model of gene expression regulation in bacteria via formation of RNA secondary structures” Molecular Biology, 2006, V. 40, No 3, p. 440–453.
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“Computation of regulation efficiency of tryptophan biosynthesis in bacteria based on a model of classic attenuation” Information Processes, V. 6, No 1, pp. 55–57.
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“An algorithm for detecting conserved motifs in nucleotide sequences” Information processes, 2006, V. 6, No 1, pp. 33–36. [in Russian]
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“An algorithm of searching for proteins coherent with a given phylogenetic profile” Information Processes, 2006, V. 6, No 1, pp. 24–32. [in Russian]

“Mass detection of conserved T-box containing regulatory structures: search results” Information Processes, 2006, V. 6, No 1, pp. 20–23. [in Russian]

“Translation Regulation of Intron-containing Genes in Chloroplasts” Journal of Bioinformatics and Computational Biology, 2006, Vol. 4, No. 4, P. 783–792. PMID: 17007067

“Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny” An article in the book: “Bioinformatics of Genome Regulation and Structure II”, Springer Science & Business Media, Inc. 2006, pp. 189–204.
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Perfect subsets of invariant CA-sets. Math.Notes, 2005, 77, 3, pp. 307--310.
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A cofinal family of equivalence relations generated by Borel ideals. Logic Colloquium 2005. ASL European Summer meeting. July 28 -- August 3, Athens, Greece, pp. 83. Department of Mathematics, University of Athens, Greece, 2005.

“Phylogenetic signal vs. informational noise: combat for resolution” Proceedings of the international conference “9th Evolutionary Biology Meeting”, Marseille, France, September 21–23 2005.

“A method to optimize primary sequence data for enhanced tree resolution” Proceedings of the 4th European Conference on Computational Biology ECCB 2005, Madrid, Spain, September 28 – October 01 2005.

“Mathematic models of evolution and gene expression regulation” Proceedings of the RAS conference “Mathematic models of pattern recognition”, November 20–26 2005, Moscow, pp. 366–368. [in Russian]

“Transcription regulation with T-boxes” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 222–224. [in Russian]

“Translation regulation in Actinobacteria and Cyano-bacteria based on mRNA secondary structures” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 216–221. [in Russian]

“Macro- and microconditions in a model of attenuator regulation of gene expression in bacteria” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 210–215. [in Russian]

“A model of attenuator regulation in bacteria” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 205–209. [in Russian]

“An algorithm for mass searching of T-box structures in bacteria” MCCMB’05, 2005, pp. 202–206.

“A model for evolutionary event reconstruction” MCCMB’05, 2005, pp. 217–219.

“Enhancing phylogenetic inference: concentration of the signal in sequence data” MCCMB’05, 2005, pp. 342–346.

“Algorithms to reconstruct ancestral gene evolution events” MCCMB’05, 2005, pp. 128–129.

“RNA regulatory structures in Actinobacteria and Cyanobacteri” MCCMB’05, 2005, pp. 351–353.

“A model for bacterial gene expression regulation with secondary RNA structures” MCCMB’05, 2005, pp. 214–216.

“Translation regulation in chloroplasts” Information Processes, 2005, V. 5, No 5, pp. 400–404. [in Russian]
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“Searching for conservative motifs in leader regions of genes on a fixed species tree” Information Processes, 2005, V. 5, No 4, pp. 265–270. [in Russian]
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“Removing noise in protein multiple alignment” Information Processes, 2005, V. 5, No 5, pp. 380–391. [in Russian]
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“An algorithm and search results for a model of gene expression regulation with RNA secondary structures in bacteria” Information Processes, 2005, V. 5, No 5, pp. 337–366. [in Russian]
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“Algorithm for a Large-Scale Search for T-Box Transcription Regulation in Bacteria” Molecular biology, 2005, V. 39, No 6, pp. 946–948. PMID: 16358746

“Expression Regulation of the Amino Acid Biosynthesis and Aminoacyl-tRNA Synthase Genes in Actinobacteria” Molecular biology, 2005, V. 39, No 6, pp. 942–945. PMID: 16358745

“Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria” BMC Microbiology, 2005, 5:54. PMID: 16202131
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“Identification of Ancestral Genes That Introduce Incongruence between Protein- and Species Trees” Molecular biology, 2005, V. 39, No 5, pp. 741–751. PMID: 16240718

“Perfect subsets of invariant CA-sets” Mathematical Notes, 2005, 77, 3–4, pp. 307–310.
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“A cofinal family of equivalence relations generated by Borel ideals” Conference of Association for Symbolic Logic, Greece, Logic Colloquium 2005, ASL European Summer Meeting, July 28 – August 2, Athens, Greece, University of Athens, Greece, pp. 83.

“Note on Cliques and Alignments” Information Processes, 2004, V. 4, No 3, сс. 241–246.
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“Inferring evolutionary events, quality of COGs, measuring the dissimilarity between gene and species trees” Presentation abstracts of the EMBO World Phylogenetic Course 2004. November 1–7 2004, Rio de Janeiro, Brazil.

“Complex phylogenetic analysis of the evolutionary history for some prokaryotes family” Biophysics (Moscow), 2004, V. 48, Suppl. 1 (2003), pp. 97–106.

“New approach for detecting common secondary structures in a set of RNA sequences” Biophysics (Moscow), 2004, V. 48, Suppl. 1 (2003), pp. 56–67.

“Properties of cysteine synthesis in Corynebacterium, Mycobacterium and Propionibacterium” Information Processes, 2004, V. 4, No 3, pp. 247–250. [in Russian]
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On the set of constructive real numbers, Proceedings of the Steklov Mathematical Institute, V. 247, 2004, pp. 83–114.
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“Multifraction graphs with two vertices per fraction” Information processes, 2004, V. 4, No 2, pp. 127–132. [in Russian]
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“Fundamentals of elementary mathematics” Recommended as student textbook for universities and teacher"s training colleges, 2004, Iris-press, 625 pages. [in Russian]
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“Bioinformatics of Bacteria: central issues and model types” International conference “Issues of control and modeling in complex systems”, June 14–17 2004, RAS, pp. 5–11. [in Russian]

“An algorithm to search for complex signals” International conference “Issues of control and modeling in complex systems”, June 14–17 2004, RAS, pp. 158–162. [in Russian]