“A geometric method of searching for clique in the graph and its application to signal detection” International conference “Issues of control and modeling in complex systems”, June 14–17 2004, RAS, pp. 154–157. [in Russian]

“A model of biosynthesis regulation” Proceedings of VI International conference “Issues of control and modeling in complex systems”, June 14-17 2004, RAS, pp. 151–153. [in Russian]

“Measuring the Dissimilarity Between Gene and Species Trees, the Quality of a COG” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 2, pp. 281–284.
Go to publication

“A Model of Tryptophan Biosynthesis Regulation” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 2, pp. 53–55.
Go to publication

”Amino Acid Biosynthesis Attenuation in Bacteria“ Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 1, pp. 307–310.
Go to publication

“Detection of Classical Attenuation in Bacterial Genomes” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 1, pp. 116–118.
Go to publication

“Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis” FEMS Microbiological Letters, 2004, 234(2), pp. 357–370. PMID: 15135544
Go to publication

“On the concept of informational interaction, 3: speech intellect” Information Processes, 2004, V. 4, No 2, pp. 117–126. [in Russian]
Go to publication

On some classical problems of descriptive set theory. Russian Math. Surveys, 2003, 58, 5, pp. 839--927.
Go to publication

“Algorithm for detecting alternative secondary RNA structures and mass analysis attenuator regulation in proteobacteria” MCCMB’03, 2003, pp. 144–145.

Searching for alternative RNA secondary structures in gamma-proteobacteria. Information processes, V. 3, No 1, 2003, p. 23-38. [in Russian]

“Search for Alternative RNA Secondary Structures Regulating Expression of Bacterial Genes” Molecular biology, V. 37, No 5, 2003, p. 707–715. PMID 14593920

Informational structure of dynamic games and the information content available to players, Logic research, RAS, 2003, p. 36-47. [in Russian]

On the concept of informational interaction, 2: pre-psychic level. Information processes, V. 3, No 2, 2003, p. 1-22. [in Russian]
Go to publication

“On some classical problems of descriptive set theory” Russian mathematical surveys (Uspekhi matematicheskih nauk), V. 58, No 5, 2003, p. 839-927.

“Complex phylogenetic analysis of evolutionary history for prokaryotes families” MCCMB’03, 2003, pp. 146–147.

“Detecting common secondary structures in a set of RNA sequences and its testing” MCCMB’03, 2003, pp. 83–85.

“Computer detecting of glycerol-3-phosphate metabolism regulation in proteobacterial genomes” MCCMB’03, 2003, pp. 52–53.

DNA: from molecules toward genomes, from biochemical breakthroughs toward algorithmic analysis. Proceedings of the RAS (Vestnik RAN), No 11, 2003, p. 963-970. [in Russian]

Classic problems of descriptive set theory, Proceedings of IV international Smirnov conference, RAS, Moscow, 2003, p. 32-34. [in Russian]

The result of an information process depends on the nature and content of information available to its participants. International conference of RAS, Samara, 2003, p. 445-453. [in Russian]

“Search for Conserved Secondary Structures of RNA” Molecular biology, V. 37, No 5, 2003, p. 723-732. PMID 14593922

On the concept of informational interaction, 1: pre-psychic level. Information processes, V. 3, No 1, 2003, p. 1-22. [in Russian]

Searching for alternative RNA secondary structures. Information processes, V. 3, No 1, 2003, p. 47-60. [in Russian]

“Computer-Assisted Analysis of Regulation of the Glycerol-3-Phosphate Metabolism in Genomes of Proteobacteria” Molecular Biology, V. 37, No 5, 2003, сс. 716–722. PMID 14593921

“Identification of Horizontal Gene Transfer from Phylogenetic Gene Trees” Molecular biology, V. 37, No 4, 2003, p. 571-584. PMID 12942641
Download (84.6 KB)

“An algorithm for identification of regulatory signals in unaligned DNA sequences, its testing and parallel implementation” In Silico Biology, V. 3, No 1,2, 2003, pp. 33–47. PMID 12762844
Go to publication

“Methods of horizontal gene transfer determination using phylogenetic data” In Silico Biology, V. 3, No 1,2, 2003, pp. 17–31. PMID 12762843
Go to publication

Stochastic dynamic games with information of various type. Information transmission problems, 2003, V 39, issue 3, p. 40-71. [in Russian]

Some algorithms related to finite groups, Information processes, V 3, No 1, 2003, p. 39-46. [in Russian]
Go to publication

Description and performance of a modified algorithm to search for alternative RNA secondary structures. Information processes, 2002, V. 2, No 1, p. 100-105. [in Russian]

“Tree Reconciliation: Reconstruction of Species Phylogeny by Phylogenetic Gene Trees” Molecular biology, 2002, V. 36, No 5, p. 650-658. PMID 12391844
Download (61.6 KB)

“Parallel Algorithm for Searching Regulatory Signal in Bacterial Genome” Proceedings of the Third International Conference of Bioinformatics of Genome Regulation and Structure (BGRS’2002), Novosibirsk, Russia, July 14-20, 2002, v. 1, p. 24-27.
Go to publication

“An Algorithm for Searching for Common Secondary Structures in a Set of RNA Sequences” Proceedings of The Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2002), Novosibirsk, Russia, July 14–20, 2002, V. 3, pp. 20–22.
Go to publication

“Algorithm for Searching for Alternative Secondary RNA Structures” Proceedings of The Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2002), Novosibirsk, Russia, July 14–20, 2002, V. 3, pp. 14–20.
Go to publication

“Method of Horizontal Gene Transfer Determination Using Phylogenetic Data” Proceedings of The Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2002), Novosibirsk, Russia, July 14–20, 2002, V. 2, pp. 61–63.
Go to publication

On the concept of informational interaction, 3: speech intellect. Proceedings of IV international conference of the RAS «Issues in control and modeling in complex systems», Samara, RAS, 2002, p. 7-17. [in Russian]

Some approaches to detect HGTs with phylogenetic data. Information processes, 2002, V. 2, No 1, p. 120-140. [in Russian]

An algorithm to search for conservative RNA secondary structures in a database of RNA fragments. Information processes, 2002, V. 2, No 1, p. 55-58. [in Russian]

On two algorithms of searching for alternative RNA structures. Information processes, V. 1, No 2, 2001, p. 178-187. [in Russian]

“First projective sets, AE-prefix and quantifiers elimination” Abstracts of International conference on Mathematical Logic, Algebra and Set theory dedicated to the 100-th anniversary of P.S. Novikov, August 27–31 2001, Steklov Mathematical Institute RAS, Moscow, 2001, p. 27.

On the concept of informational interaction, 2: pre-speech intellect. Proceedings of III international conference of the RAS «Issues in control and modeling in complex systems», Samara, RAS, 2001, p. 25-42. [in Russian]

An algorithm to detect regulatory signal: testing and biological applications. Proceedings of III international conference of the RAS «Issues in control and modeling in complex systems», Samara, RAS, 2001, p. 632-634. [in Russian]

A probabilistic algorithm of solving an NP-complete problem, Proceedings of III international conference «Smirnov readings» of RAS, Moscow, 2001, p. 47-49. [in Russian]

An algorithm to detect horizontal gene transfer events with multiple gene trees. Information processes, V. 1, No 2, 2001, p. 167-177. [in Russian]

“Algorithm of Regulatory Signal Recognition in DNA Sequences” Molecular Biology, V. 35, No 6, 2001, p. 841-848. PMID 11771146

An approach to infer evolutionary species tree from multiple gene data. Information processes, V. 1, No 1, 2001, p. 64-77. [in Russian]

An algorithm to detect regulatory signals in DNA sequence data (1). Information processes, V. 1, No 1, 2001, p. 56-63. [in Russian]