“Identification of Horizontal Gene Transfer from Phylogenetic Gene Trees” Molecular biology, V. 37, No 4, 2003, p. 571-584. PMID 12942641
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“An algorithm for identification of regulatory signals in unaligned DNA sequences, its testing and parallel implementation” In Silico Biology, V. 3, No 1,2, 2003, pp. 33–47. PMID 12762844
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“Tree Reconciliation: Reconstruction of Species Phylogeny by Phylogenetic Gene Trees” Molecular biology, 2002, V. 36, No 5, p. 650-658. PMID 12391844
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“Algorithm of Regulatory Signal Recognition in DNA Sequences” Molecular Biology, V. 35, No 6, 2001, p. 841-848. PMID 11771146

An approach to infer evolutionary species tree from multiple gene data. Information processes, V. 1, No 1, 2001, p. 64-77. [in Russian]

An algorithm to detect regulatory signals in DNA sequence data (1). Information processes, V. 1, No 1, 2001, p. 56-63. [in Russian]