ANA HEp-2 cells image classification using number, size, shape and localization of targeted cell regions, Pattern Recognition, 47(7), pp. 2360-2366, 2014.
2014 г.
Авторы: Rueda S., Fathima S., Knight C., Yaqub M., Papageorghiou A., Rahmatullah B., Foi A., Maggioni M., Pepe A., Tohka J., Stebbing R.V., McManigle J.E., Ciurte A., Bresson X., Cuadra M.B., Sun C., Ponomarev G.V., Гельфанд М.С., Казанов М.Д., Wang C., Chen H., Hung C., Noble J.A.
Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge, IEEE Transactions on Medical Imaging, 33(4), pp.797-813, 2014.
Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum. Nucleic Acids Res. 2012 Dec 2. Перейти к публикации
Evolution of transcriptional regulation in closely related bacteria. BMC Evol Biol. 2012 Oct 6;12:200. Перейти к публикации
2012 г.
Авторы: De Ingeniis J., Kazanov M., Shatalin K., Gelfand M., L. Osterman A., Sorci L.
Glutamine versus ammonia utilization in the NAD synthetase family Перейти к публикации
2011 г.
Авторы: Rodionov D., Novichkov P.S., Stavrovskaya E., Rodionova I.A., Li X, Kazanov M., 170, Gerasimova A.V., 60, Kovaleva G., Permina E.A., Laikova O.N., Overbeek R, Romine M.F., Fredrickson J.K., Arkin A.P., Dubchak I, Osterman A.L., Gelfand M.
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. Перейти к публикации
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res, 38: D111-D118. Перейти к публикацииЗагрузить (474.3 KB)
Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs. BMC Evol Biol. 2009, 9: 142. Перейти к публикации
2009 г.
Авторы: Huang N., De Ingeniis J., Galeazzi L., Mancini C., Korostelev Y.D., Rakhmaninova A., Gelfand M., Rodionov D., Raffaelli N., Zhang H.
Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism. Structure. 2009, 17: 939-51. Перейти к публикацииЗагрузить (2.1 MB)
Совместная метаболическая активность тли Acyrthosiphon pisum и симбиотической бактерии Buchnera aphidicola STR APS Молекулярная биология. 2009, 43(6): 1093-95 PDF
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“Comparative genomic analysis of T-box regulatory systems in bacteria”
Ribonucleic acids molecular biology (RNA),
V. 14, No. 4, April 2008, pp. 717-735.
PMID: 18359782 Перейти к публикации
«Компьютерный анализ, функциональная аннотация и изучение эволюции Т-бокс регулона в бактериях» Труды конференции ИТиС 30, Звенигород, 18–21 сентября 2007, сс. 220-221.
“Analysis of evolution of T-box regulatory elements prediction of amino acid transporters and other amino acid related genes” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 30–37.
“Function and evolutionary analysis of the T-box regulon in bacteria” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, November 2007, pp. 309–310.
“Reconstruction of ancestral regulatory signal along a phylogeny” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, 2007, pp. 111–113.
2007 г.
Авторы: Северинов К., Семенова Е., 60, Казаков Т., Гельфанд М.С.
"Low-molecular-weight post-translationally modified microcins." Mol Microbiol., 2007, 65(6):1380-94. Перейти к публикации
2007 г.
Авторы: 60, J. Cipriano M., С. Новичков П., Minovitsky S., Виноградов Д.В., Arkin A., А. Миронов А., Л. Дубчак И., Гельфанд М.С.
"RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes." Nucleic Acids Res., 2007, 35:D407-12. Перейти к публикации
Recognition of transmembrane segments in proteins: review and consistency-based benchmarking of internet servers. J. Bioinformatics and Computational Biology. 2006, 4(5): 1033-56. Загрузить (308.6 KB)
“Evolutional and Functional Analysis of T-box Regulon in Bacteria: Identification of new Genes Involved in Amino Acid Metabolism”
Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 3, pp. 236–240. Перейти к публикации
2006 г.
Авторы: А. Пермина Е., 60, В. Калинина О., Гельфанд М.С.
"Comparative genomics of regulation of heavy metal resistance in Eubacteria." BMC Microbiol., 2006, 6:49. Перейти к публикации
Comparative genomics of transcriptional regulation in yeasts and its application to identification of a candidate alpha-isopropylmalate transporter. Journal of Bioinformatics and Computational Biology 4(5):981–998. Загрузить (1 MB)
Comparative genomics and evolution of bacterial regulatory systems.
Bioinformatics of Genome Regulation and Structure II (Springer Science+Business Media, Inc.) P. 111-119 (2005)
“Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria”
BMC Microbiology,
2005, 5:54.
PMID: 16202131 Перейти к публикации
Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems. Nucleic Acids Res. 2004 Jun 23;32(11):3340-53. Перейти к публикации
«Биоинформатика бактерий – основные задачи и характер моделей» Труды 6-й международной конференции «Проблемы управления и моделирования в сложных системах», 14–17 июня 2004, РАН, сс. 5–11.
“Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis”
FEMS Microbiological Letters,
2004, 234(2), pp. 357–370.
PMID: 15135544 Перейти к публикации
A transporter of Escherichia coli specific for l- and d-methionine is the prototype for a new family within the ABC superfamily. Arch Microbiol, 2003. 180: 88-100. Перейти к публикации
Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria. FEMS Microbiol Lett. 2003 May 28; 222(2):211-20. Перейти к публикации
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch? Nucleic Acids Research, 2003, Dec 1, 31(23):6748-57. Перейти к публикации
Regulation of the vitamin B(12) metabolism and transport in bacteria by a conserved RNA structural element. RNA. 2003 Sep; 9(9):1084-1097. Перейти к публикации
