“Inferring optimal scenario of gene evolution along a species tree” Abstracts of The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2008), Novosibirsk, June 22–28, p. 90.
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“Models of gene expression regulation and evolution of regulatory elements” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 158–165.

“Modeling evolution of the nucleotide sequence with secondary structure” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 68–75.

“Reconstruction of ancestral regulatory signal along a phylogeny” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, 2007, pp. 111–113.

“Reconstruction of ancestral regulatory signals along a transcription factor tree” Molecular Biology, 2007, V. 41, No. 5, pp. 836–842.PMID 18240574

“Inferring regulatiory signal profiles and evolutionary events” Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS"2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 151–154.
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“Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny” An article in the book: “Bioinformatics of Genome Regulation and Structure II”, Springer Science & Business Media, Inc. 2006, pp. 189–204.
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“Macro- and microconditions in a model of attenuator regulation of gene expression in bacteria” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 210–215. [in Russian]

“Algorithms to reconstruct ancestral gene evolution events” MCCMB’05, 2005, pp. 128–129.

“Removing noise in protein multiple alignment” Information Processes, 2005, V. 5, No 5, pp. 380–391. [in Russian]
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“An algorithm and search results for a model of gene expression regulation with RNA secondary structures in bacteria” Information Processes, 2005, V. 5, No 5, pp. 337–366. [in Russian]
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“Identification of Ancestral Genes That Introduce Incongruence between Protein- and Species Trees” Molecular biology, 2005, V. 39, No 5, pp. 741–751. PMID: 16240718

“Inferring evolutionary events, quality of COGs, measuring the dissimilarity between gene and species trees” Presentation abstracts of the EMBO World Phylogenetic Course 2004. November 1–7 2004, Rio de Janeiro, Brazil.

“New approach for detecting common secondary structures in a set of RNA sequences” Biophysics (Moscow), 2004, V. 48, Suppl. 1 (2003), pp. 56–67.

“A model of biosynthesis regulation” Proceedings of VI International conference “Issues of control and modeling in complex systems”, June 14-17 2004, RAS, pp. 151–153. [in Russian]

“A Model of Tryptophan Biosynthesis Regulation” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 2, pp. 53–55.
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“Detecting common secondary structures in a set of RNA sequences and its testing” MCCMB’03, 2003, pp. 83–85.

“Search for Conserved Secondary Structures of RNA” Molecular biology, V. 37, No 5, 2003, p. 723-732. PMID 14593922

Searching for alternative RNA secondary structures. Information processes, V. 3, No 1, 2003, p. 47-60. [in Russian]

“An Algorithm for Searching for Common Secondary Structures in a Set of RNA Sequences” Proceedings of The Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2002), Novosibirsk, Russia, July 14–20, 2002, V. 3, pp. 20–22.
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An algorithm to search for conservative RNA secondary structures in a database of RNA fragments. Information processes, 2002, V. 2, No 1, p. 55-58. [in Russian]

On two algorithms of searching for alternative RNA structures. Information processes, V. 1, No 2, 2001, p. 178-187. [in Russian]

“Algorithm of Regulatory Signal Recognition in DNA Sequences” Molecular Biology, V. 35, No 6, 2001, p. 841-848. PMID 11771146

An algorithm to detect regulatory signals in DNA sequence data (1). Information processes, V. 1, No 1, 2001, p. 56-63. [in Russian]

On an algorithm of detecting regulatory signal in sequence data. Logic research. Issue 7, Moscow, Nauka, 2000, p. 159-163. [in Russian]

Algorithms of detecting regulatory signal and constructing evolutionary trees. Proceedings of II international conference of the RAS «Issues in control and modeling in complex systems», Samara, 2000, RAS Press, p. 130-137. [in Russian]