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2020 year
Authors: Rubanov L., Shilovsky G., Seliverstov A., Zverkóv O., Lyubetsky V.

Gene loss prediction based on genomic structure. The proceedings of International forum Biotechnology: state of the art and perspectives, Moscow, Russia, October 2830 2020, Iss. 18, P. 259260. DOI: 10.37747/2312-640X-2020-18-258-260
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2020 year
Authors: Lyubetsky V., Shilovsky G., Zverkóv O., Seliverstov A., Rubanov L.

New bioinformatics methods for identification of lost genes and protein isoforms. Homo sapiens liberatus, Proceedings of the 3rd International Conference in celebration of the 85th birthday of professor V.P. Skulachev, Moscow, Russia, February 2021 2020, Abstract Book. Moscow: Torus Press, 2020, P. 4142. DOI: 10.30826/HomoSapiens-2020-30
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2020 year
Authors: Lyubetsky V., Shilovsky G., Seliverstov A., Zverkóv O., Rubanov L.

Evolution of proteins involved in response to ROS. Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2020), The Twelfth International Multiconference Abstracts, Novosibirsk, Russia, 610 July 2020. Novosibirsk: ICG SB RAS, 2020, P. 652653. DOI: 10.18699/BGRS/SB-2020-398
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2020 year
Authors: Rubanov L., Zverkóv O., Shilovsky G., Seliverstov A., Lyubetsky V.

Protein-coding genes in Euarchontoglires with pseudogene homologs in humans. Life, 2020, Vol. 10, No. 9, Art. 192, 10 pp. DOI: 10.3390/life10090192, PMID: 32927891
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2020 year
Authors: Lyubetsky V., Zverkóv O., Rubanov L., Seliverstov A.

Optimal growth temperature and intergenic distances in bacteria, archaea, and plastids of rhodophytic branch. BioMed Research International, 2020, Vol. 2020, Art. 3465380, 10 pp. DOI: 10.1155/2020/3465380, PMID: 32025518
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2019 year
Authors: Zverkóv O., Mikhailov K., Isaev S., Rusin L., Logacheva M., Penin A., Moroz L., Panchin Y., Lyubetsky V., Aleoshin V.

Dicyemida and Orthonectida: Two stories of body plan simplification. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB19, Moscow, Russia, July 2730 2019.
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2019 year
Authors: Rubanov L., Shilovsky G., Seliverstov A., Zverkóv O., Lyubetsky V.

Mouse genes lost in rodent and primate species with long lifespan. The proceedings of International congress Biotechnology: state of the art and perspectives, Moscow, Russia, February 2527 2019, Iss. 17, P. 342.
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2019 year
Authors: Rubanov L., Zaraisky A., Shilovsky G., Seliverstov A., Zverkóv O., Lyubetsky V.

Screening for mouse genes lost in mammals with long lifespans. BioData Mining, 2019, Vol. 12, Art. 20. DOI: 10.1186/s13040-019-0208-x, PMID: 31728160 (WoS Q1)
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2019 year
Authors: Shilovsky G., Zverkóv O., Seliverstov A., Ashapkin V., Putyatina T., Rubanov L., Lyubetsky V.

New C-terminal conserved regions of tafazzin, a catalyst of cardiolipin remodeling. Oxidative Medicine and Cellular Longevity, Vol. 2019, Art. 2901057. DOI: 10.1155/2019/2901057, PMID: 31781330
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2019 year
Authors: Korotkova D., Lyubetsky V., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Martynova N., Nesterenko A., Tereshina M., Peshkin L., Zaraisky A.

Bioinformatics screening of genes specific for well-regenerating vertebrates reveals c-answer, a regulator of brain development and regeneration. Cell Reports, Vol. 29, Iss. 4, P. 10271040. DOI: 10.1016/j.celrep.2019.09.038, PMID: 31644900 (WoS Q1, IF 8)
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2019 year
Authors: Seliverstov A., Zverkóv O., Rubanov L., Lyubetsky V.

Protein clustering and gene loss prediction. Computer Assisted Mathematics Conference. Electrotechnical University "LETI" Saint-Petersburg, Russia, July 22-24, 2019. P. 7
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2019 year
Authors: Zverkóv O., Mikhailov K., Isaev S., Rusin L., Popova O., Logacheva M., Penin A., Moroz L., Panchin Y., Lyubetsky V., Aleoshin V.

Dicyemida and Orthonectida: Two stories of body plan simplification. Frontiers in Genetics Vol. 10, Article 443. DOI: 10.3389/fgene.2019.00443, PMID: 31178892
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2018 year
Authors: Korotkova D., Lyubetsky V., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Martynova N., Nesterenko A., Tereshina M., Peshkin L., Zaraisky A.

Bioinformatic screening of genes present only in well regenerating vertebrates reveals novel FGF and purinergic signaling modulator - c-Answer. bioRxiv, 13 Dec 2018. DOI: 10.1101/494609
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2018 year
Authors: Aleoshin V., Slyusarev G., Mikhailov K., Popova O., Rusin L., Zverkóv O., Lyubetsky V.

Orthonectida and Dicyemida: Two stories of body plan simplification. In: Molecular Phylogenetics (Eds.: A. Troitsky, L. Rusin), Moscow: Torus Press, 2018, P. 34. DOI: 10.30826/MolPhy2018-01
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2018 year
Authors: Seliverstov A., Shilovsky G., Rubanov L., Zverkóv O., Lyubetsky V.

Longevity in mammals: lost genes as a determinant. Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2018): The Eleventh International Conference (2025 Aug. 2018, Novosibirsk, Russia); Abstracts. Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences; Novosibirsk State University. Novosibirsk: ICG SB RAS, 2018. P. 249. DOI: 10.18699/BGRSSB-2018-221
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2018 year
Authors: Seliverstov A., Rubanov L., Shilovsky G., Zverkóv O., Lyubetsky V.

Longevity in euarchontoglires: lost genes as a determinant. FEBS Open Bio, 2018, Vol. 8 (Suppl. 1), P. 456457; DOI: 10.1002/2211-5463.12453.
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2017 year
Authors: Zverkóv O., Mikhailov K., Rusin L., Lyubetsky V., Aleoshin V.

Phylogenomic evidence disentangles affinities of the Mesozoa. Proceedings of the 4th International Congress on Invertebrate Morphology (ICIM4), Moscow, Russia, August 1823 2017, P. 55.
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2017 year
Authors: Lyubetsky V., Gershgorin R., Rubanov L., Seliverstov A., Zverkóv O.

Evolution and systematics of plastids of rhodophytic branch. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB17, Moscow, Russia, July 2730 2017, P. 48.
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2017 year
Authors: Lyubetsky V., Rubanov L., Gorbunov K., Zverkóv O., Seliverstov A.

Highly conserved elements in mitochondrial genomes of ciliates and monocots. Materials of the IX International Congress Biotechnology: State of the Art and Prospects of Development, Moscow, Russia, February 2022 2017, Part 1, P. 393.
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2017 year
Authors: Zverkóv O., Rubanov L., Rusin L., Seliverstov A., Lyubetsky V.

Finding long highly conserved elements in complete animal genomes. CEUR Workshop Proceedings, Feb 23 2018, Vol. 2064, Convergent Cognitive Information Technologies 2017, P. 402408, in Russian.
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2017 year
Authors: Lyubetsky V., Korotkova D., Ivanova A., Rubanov L., Seliverstov A., Zverkóv O., Nesterenko A., Tereshina M., Zaraisky A.G.

Novel transmembrane protein c-Answer revealed by bioinformatic screening of genes present only in well regenerating animals. FEBS Journal, 2017, Vol. 284, Iss. S1, P. 155. doi:10.1111/febs.14174

2017 year
Authors: Gershgorin R., Gorbunov K., Zverkóv O., Rubanov L., Seliverstov A., Lyubetsky V.

Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates. Life, 2017, Vol. 7, No. 9. doi:10.3390/life7010009, PMID: 28264444
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2016 year
Authors: Korolev S., Gorbunov K., Zverkóv O., Seliverstov A., Lyubetsky V.

Degenerate inverted repeats in the genomes of mycobacterium. CEUR Workshop Proceedings (CEUR-WS.org), Selected Papers of the First International Scientific Conference Convergent Cognitive Information Technologies (Convergent 2016), Moscow, Russia, November 2526 2016, vol. 1763, p. 182187, in Russian.

2016 year
Authors: Rubanov L., Seliverstov A., Zverkóv O., Lyubetsky V.

A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata. BMC Bioinformatics. 2016, vol. 17, art. 385, 16 pp. DOI: 10.1186/s12859-016-1257-5, PMID: 27645252
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2016 year
Authors: Korolev S., Zverkóv O., Seliverstov A., Lyubetsky V.

Ribosome reinitiation at leader peptides increases translation of bacterial proteins. Biology Direct, 2016, vol. 11, art. 20. DOI: 10.1186/s13062-016-0123-8, PMID: 27084079
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2016 year
Authors: Zverkóv O., Seliverstov A., Lyubetsky V.

Regulation of Expression and Evolution of Genes in Plastids of Rhodophytic Branch. Life, 2016, vol. 6, art. 7, 13 pp. DOI: 10.3390/life6010007, PMID: 26840333
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2015 year
Authors: Lyubetsky V., Rubanov L., Bairamov A., Shandarin I., Ivanova A., Rusin L., Zverkóv O., Seliverstov A., Zaraisky A.

A large-scale search for gene losses, gains and syntenic rearrangements in vertebrate animals. Materials of the VIII Moscow International Congress Biotechnology: State of the Art and Prospects of Development, Moscow, March 1720 2015, Part 1, P. 260261.
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2015 year
Authors: Korolev S., Lyzhin S., Zverkóv O., Seliverstov A., Lyubetsky V.

A search for genes encoding histidine-containing leader peptides in Actinobacteria. Proceedings of the 39th IITP RAS Interdisciplinary Conference & School Information Technology and Systems 2015 (ITaS15), Sochi, Russia, Sep 711 2005, Moscow: IITP, 2015, P. 5360.
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2015 year
Authors: Lyubetsky V., Rubanov L., Zverkóv O., Rusin L., Seliverstov A., Zaraisky A.

A method of detecting local gene synteny rearrangement. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB15, Moscow, July 1619 2015, Moscow, IITP RAS, 2015, P. 249252.
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2015 year
Authors: Seliverstov A., Zverkóv O., Istomina S., Pirogov S., Kitsis P.

Comparative analysis of apicoplast-targeted protein extension lengths in Apicomplexan parasites. BioMed Research International, 2015, Vol. 2015, Article ID 452958. DOI: 10.1155/2015/452958, PMID: 26114107
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2015 year
Authors: Zverkóv O., Seliverstov A., Lyubetsky V.

A database of plastid protein families from red algae and Apicomplexa and expression regulation of the moeB gene. BioMed Research International, 2015, Vol. 2015, Article ID 510598. DOI: 10.1155/2015/510598, PMID: 26114108
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2014 year
Authors: Zverkóv O., Seliverstov A., Lyubetsky V.

A database of Rhodophyte plastid protein families and regulation of moeB genes Abstracts of the Ninth International Conference on Bioinformatics of Genome Regulation and StructureSystems Biology (BGRSSB"2012), Novosibirsk, Russia, June 2328 2014, p. 176.

2014 year
Authors: Lyubetsky V., Korolev S., Seliverstov A., Zverkóv O., Rubanov L.

Gene expression regulation of the PF00480 or PF14340 domain proteins suggests their involvement in sulfur metabolism Computational Biology and Chemistry, 2014, vol. 49, p. 713.
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2013 year
Authors: Lyubetsky V., Korolev S., Seliverstov A., Zverkóv O.

Rho-dependent attenuation of sulfur metabolism in mycobacteria Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB13, Moscow, Russia, July 2528 2013.

2013 year
Authors: Kobets N., Goncharov D., Seliverstov A., Zverkóv O., Lyubetsky V.

Comparative analysis of apicoplast-targeted proteins in Toxoplasma gondii and other Apicomplexa species Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB13, Moscow, Russia, July 2528 2013.

2013 year
Authors: Lyubetsky V., Seliverstov A., Zverkóv O.

Elaboration of the Homologous Plastid-Encoded Protein Families that Separate Paralogs in Magnoliophytes Mathematical Biology and Bioinformatics, 2013, Vol. 8, No. 1, P. 225233, (in Russian).

2013 year
Authors: Zverkóv O., Seliverstov A., Lyubetsky V.

Averaged entropy as conservativity measure of genome regions. Tambov University Reports. Series: Natural and Technical Sciences. 2013, Vol. 18, Iss. 5 (part 2), P. 25292531 (in Russian).

2013 year
Authors: Lyubetsky V., Seliverstov A., Zverkóv O.

Transcription Regulation of Plastid Genes Involved in Sulfate Transport in Viridiplantae. BioMed Research International. 2013, Vol. 2013, Article ID 413450. DOI: 10.1155/2013/413450, PMID: 24073405
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2013 year
Authors: Zverkóv O., Rusin L., Seliverstov A., Lyubetsky V.

Study of Direct Repeats in Micro Evolution of Plant Mitochondria and Plastids Based on Protein Clustering. Moscow University Biological Sciences Bulletin. 2013, Vol. 68, No. 2, P. 5862. DOI: 10.3103/S0096392513020119

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