“Mathematic models of evolution and gene expression regulation” Proceedings of the RAS conference “Mathematic models of pattern recognition”, November 20–26 2005, Moscow, pp. 366–368. [in Russian]

“Transcription regulation with T-boxes” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 222–224. [in Russian]

“Translation regulation in Actinobacteria and Cyano-bacteria based on mRNA secondary structures” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 216–221. [in Russian]

“Macro- and microconditions in a model of attenuator regulation of gene expression in bacteria” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 210–215. [in Russian]

“A model of attenuator regulation in bacteria” Proceedings of the RAS conference “Issues of control and modeling in complex systems, VII International conference”, 27 June – 1 July 2005, Samara, pp. 205–209. [in Russian]

“An algorithm for mass searching of T-box structures in bacteria” MCCMB’05, 2005, pp. 202–206.

“A model for evolutionary event reconstruction” MCCMB’05, 2005, pp. 217–219.

“Enhancing phylogenetic inference: concentration of the signal in sequence data” MCCMB’05, 2005, pp. 342–346.

“Algorithms to reconstruct ancestral gene evolution events” MCCMB’05, 2005, pp. 128–129.

“RNA regulatory structures in Actinobacteria and Cyanobacteri” MCCMB’05, 2005, pp. 351–353.

“A model for bacterial gene expression regulation with secondary RNA structures” MCCMB’05, 2005, pp. 214–216.

“Translation regulation in chloroplasts” Information Processes, 2005, V. 5, No 5, pp. 400–404. [in Russian]
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“Searching for conservative motifs in leader regions of genes on a fixed species tree” Information Processes, 2005, V. 5, No 4, pp. 265–270. [in Russian]
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“Removing noise in protein multiple alignment” Information Processes, 2005, V. 5, No 5, pp. 380–391. [in Russian]
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“An algorithm and search results for a model of gene expression regulation with RNA secondary structures in bacteria” Information Processes, 2005, V. 5, No 5, pp. 337–366. [in Russian]
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“Algorithm for a Large-Scale Search for T-Box Transcription Regulation in Bacteria” Molecular biology, 2005, V. 39, No 6, pp. 946–948. PMID: 16358746

“Expression Regulation of the Amino Acid Biosynthesis and Aminoacyl-tRNA Synthase Genes in Actinobacteria” Molecular biology, 2005, V. 39, No 6, pp. 942–945. PMID: 16358745

“Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria” BMC Microbiology, 2005, 5:54. PMID: 16202131
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“Identification of Ancestral Genes That Introduce Incongruence between Protein- and Species Trees” Molecular biology, 2005, V. 39, No 5, pp. 741–751. PMID: 16240718

“Perfect subsets of invariant CA-sets” Mathematical Notes, 2005, 77, 3–4, pp. 307–310.
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“A cofinal family of equivalence relations generated by Borel ideals” Conference of Association for Symbolic Logic, Greece, Logic Colloquium 2005, ASL European Summer Meeting, July 28 – August 2, Athens, Greece, University of Athens, Greece, pp. 83.

A definable nonstandard model of the reals. J. Symbolic Logic, 2004, 69, 1, pp. 159--164.
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Borel irreducibility between two large families of Borel equivalence relations. Logic Colloquium 99, Lecture Notes in Logic, 17. Association for Symbolic Logic, 2004, pp. 100--110.
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Fully saturated extensions of the standard universe. Logic, algebra and geometry, June 1 -- 7, 2004, program, abstracts, St.,Petersburg, pp. 16--17. Euler International mathematical institute, St. Petersburg, 2004.

Fully saturated extensions of the standard universe. Models of Arithmetic and Analysis, International Congress, Pisa, June 25-26, 2004, Program and abstracts, pp. 1. Pisa, Italy, 2004.
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Fully saturated extensions of standard universe. Timetable and abstracts, Logic Colloquium 2004, p. 117. Torino, Italy, 2004.

“Note on Cliques and Alignments” Information Processes, 2004, V. 4, No 3, сс. 241–246.
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Nonstandard analysis, axiomatically. Series: Springer Monographs in Mathematics 2004, XVI, 408 p., Monograph ISBN: 978-3-540-22243-9
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“Inferring evolutionary events, quality of COGs, measuring the dissimilarity between gene and species trees” Presentation abstracts of the EMBO World Phylogenetic Course 2004. November 1–7 2004, Rio de Janeiro, Brazil.

“Complex phylogenetic analysis of the evolutionary history for some prokaryotes family” Biophysics (Moscow), 2004, V. 48, Suppl. 1 (2003), pp. 97–106.

“New approach for detecting common secondary structures in a set of RNA sequences” Biophysics (Moscow), 2004, V. 48, Suppl. 1 (2003), pp. 56–67.

“Properties of cysteine synthesis in Corynebacterium, Mycobacterium and Propionibacterium” Information Processes, 2004, V. 4, No 3, pp. 247–250. [in Russian]
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On the set of constructive real numbers, Proceedings of the Steklov Mathematical Institute, V. 247, 2004, pp. 83–114.
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“Multifraction graphs with two vertices per fraction” Information processes, 2004, V. 4, No 2, pp. 127–132. [in Russian]
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“Fundamentals of elementary mathematics” Recommended as student textbook for universities and teacher"s training colleges, 2004, Iris-press, 625 pages. [in Russian]
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“Bioinformatics of Bacteria: central issues and model types” International conference “Issues of control and modeling in complex systems”, June 14–17 2004, RAS, pp. 5–11. [in Russian]

“An algorithm to search for complex signals” International conference “Issues of control and modeling in complex systems”, June 14–17 2004, RAS, pp. 158–162. [in Russian]

“A geometric method of searching for clique in the graph and its application to signal detection” International conference “Issues of control and modeling in complex systems”, June 14–17 2004, RAS, pp. 154–157. [in Russian]

“A model of biosynthesis regulation” Proceedings of VI International conference “Issues of control and modeling in complex systems”, June 14-17 2004, RAS, pp. 151–153. [in Russian]

“Measuring the Dissimilarity Between Gene and Species Trees, the Quality of a COG” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 2, pp. 281–284.
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“A Model of Tryptophan Biosynthesis Regulation” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 2, pp. 53–55.
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”Amino Acid Biosynthesis Attenuation in Bacteria“ Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 1, pp. 307–310.
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“Detection of Classical Attenuation in Bacterial Genomes” Proceedings of the Fourth International Conference on Bionnformatics of Genome Regulation and Structure (BGRS’2004), Novosibirsk, July 25–30 2004, V. 1, pp. 116–118.
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“Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis” FEMS Microbiological Letters, 2004, 234(2), pp. 357–370. PMID: 15135544
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“On the concept of informational interaction, 3: speech intellect” Information Processes, 2004, V. 4, No 2, pp. 117–126. [in Russian]
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Some new results on Borel irreducibility of equivalence relations. Izvestiya: Mathematics, 2003, 67, 1, pp. 55--76.
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