Contemporary Set Theory: foundations of descriptive dynamics. (Russian.), Nauka, 2007. Monograph ISBN: 978-5-02-035577-4
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“Rapid evolution of promoters in Magnoliophyta chloroplasts” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 286–292.

“Analysis of evolution of T-box regulatory elements prediction of amino acid transporters and other amino acid related genes” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 30–37.

“Algorithms to model gene evolution events and reconstruct multigene phylogenies of species” Proceedings of the international conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, Moscow, November 16–19 2007, KMK Scientific Press, P. 274–277.

“Models of gene expression regulation and evolution of regulatory elements” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 158–165.

“Modeling evolution of the nucleotide sequence with secondary structure” Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, November 16–19 2007, KMK Scientific Press, Moscow, pp. 68–75.

“Function and evolutionary analysis of the T-box regulon in bacteria” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, November 2007, pp. 309–310.

“Phylogenomics of Metazoa: Constructing the Gene Set” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, 2007, pp. 267–268.

RNA Structures upstream leuA Genes in α-proteobacteria. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’07, Moscow, Russia, July 27–31 2007, P. 191–192.

“Long helices in mRNA processing” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, 2007, pp. 189–191.

“Reconstruction of ancestral regulatory signal along a phylogeny” Proceedings of International Moscow Conference on Computational Molecular Biology: МССМВ’07, 2007, pp. 111–113.

“RNAmodel Web Server: Modeling Classic Attenuation in Bacteria” In Silico Biology, 2007, V. 7, No 3, pp. 285–308. PMID: 18415978
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“Attenuation regulation as a term rewriting system” Article in the book “Algebraic Biology”, Lecture Notes in Computer Science 4545, Springer Berlin / Heidelberg, pp. 81–94, (Proceedings of the 2nd international conference on Algebraic biology: AB"07, Castle of Hagenberg, Austria, July 2-4 2007).
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“Reconstruction of ancestral regulatory signals along a transcription factor tree” Molecular Biology, 2007, V. 41, No. 5, pp. 836–842.PMID 18240574

“The number of long hairpins in intergenic trailer regions of actinobacteria is far greater than in other genomic regions” Molecular Biology, 2007, V. 41, No. 4, pp. 670–673. PMID: 17936997

“Regulation of proline biosynthesis in proteobacteria” Molecular Biology, 2007, V. 41, No. 3, pp. 513–515.

Problems of set-theoretic non-standard analysis, Russian Mathematical Surveys, 2007, 62(1), pp. 45–111.
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On reducibility of monadic equivalence relations, Math. Notes, 2007, V. 81, No 6, pp. 757–766.
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“Nonstandard representations of locally compact groups” Proceedings (Matematicheskie zametki) of RAS, 2007, 82, 3, pp. 341–346.
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“Modeling classic attenuation regulation of gene expression in bacteria” Journal of Bioinformatics and Computational Biology, Vol. 5, Iss. 1, 2007, pp. 155–180. PMID: 17477496
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A cofinal family of equivalence relations and Borel ideals generating them. Proc. Moscow Steklov Inst. Math., 2006, 252, pp. 85--103.
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Uniqueness of nonstandard extensions. Moscow Univ. Math. Bull., 2006, 61, 5, pp. 1--8
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Effective cardinals in the nonstandard universe. Mathematical Logic in Asia. Proceedings of the 9th Asian Logic Conference. Novosibirsk, Russia, 16--19 August, 2005, pp. 113--144. World Scientific Publishers, 2006.
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Translation of some chloroplast genes is checked to allow for splicing and editing. Biophysics. 2006, Vol. 51, Suppl. 1, P. S18–S22. DOI: 10.1134/S0006350906070049
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“Modeling classic attenuation regulation of gene expression in bacteria” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 1, pp. 102–105.
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“Refinement of phylogenetic signal in multiple sequence alignment: results of simulation study” Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS"2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 222–224.
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“Inferring regulatiory signal profiles and evolutionary events” Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS"2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 151–154.
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“Detecting Hairpins in 3’-Untranslated Regions of Highly Expressed Genes in Actinobacteria” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 1, pp. 99–101.
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“Evolutional and Functional Analysis of T-box Regulon in Bacteria: Identification of new Genes Involved in Amino Acid Metabolism” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 3, pp. 236–240.
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“Translation Regulation in Chloroplasts” Proceedings of The Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’2006), Novosibirsk, July 16–22 2006, V. 1, pp. 146–149.
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“A Cofinal Family of Equivalence Relations and Borel Ideals Generating Them” Proceedings of the Steklov Institute of Mathematics, 2006, V. 252, No 1, pp. 85–103.
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“Model of gene expression regulation in bacteria via formation of RNA secondary structures” Molecular Biology, 2006, V. 40, No 3, p. 440–453.
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“Computation of regulation efficiency of tryptophan biosynthesis in bacteria based on a model of classic attenuation” Information Processes, V. 6, No 1, pp. 55–57.
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“An algorithm for detecting conserved motifs in nucleotide sequences” Information processes, 2006, V. 6, No 1, pp. 33–36. [in Russian]
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“An algorithm of searching for proteins coherent with a given phylogenetic profile” Information Processes, 2006, V. 6, No 1, pp. 24–32. [in Russian]

“Mass detection of conserved T-box containing regulatory structures: search results” Information Processes, 2006, V. 6, No 1, pp. 20–23. [in Russian]

“Translation Regulation of Intron-containing Genes in Chloroplasts” Journal of Bioinformatics and Computational Biology, 2006, Vol. 4, No. 4, P. 783–792. PMID: 17007067

“Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny” An article in the book: “Bioinformatics of Genome Regulation and Structure II”, Springer Science & Business Media, Inc. 2006, pp. 189–204.
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Perfect subsets of invariant CA-sets. Math.Notes, 2005, 77, 3, pp. 307--310.
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On the equivalence of two forms of the continuum hypothesis. Moscow Univ. Math. Bull., 2005, 3, pp. 45--46
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